Strain Fitness in Variovorax sp. OAS795 around ABID97_RS04020

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS04015 and ABID97_RS04020 are separated by 138 nucleotidesABID97_RS04020 and ABID97_RS04025 are separated by 118 nucleotides ABID97_RS04015: ABID97_RS04015 - LysR family transcriptional regulator, at 822,952 to 823,878 _RS04015 ABID97_RS04020: ABID97_RS04020 - GMC family oxidoreductase N-terminal domain-containing protein, at 824,017 to 825,648 _RS04020 ABID97_RS04025: ABID97_RS04025 - ABC transporter substrate-binding protein, at 825,767 to 826,840 _RS04025 Position (kb) 824 825 826Strain fitness (log2 ratio) -1 0 1 2at 823.881 kb on - strandat 823.984 kb on + strandat 824.041 kb on + strandat 824.041 kb on + strandat 824.041 kb on + strandat 824.147 kb on - strandat 824.173 kb on + strandat 824.173 kb on + strandat 824.212 kb on + strand, within ABID97_RS04020at 824.308 kb on + strand, within ABID97_RS04020at 824.308 kb on + strand, within ABID97_RS04020at 824.309 kb on - strand, within ABID97_RS04020at 824.309 kb on - strand, within ABID97_RS04020at 824.309 kb on - strand, within ABID97_RS04020at 824.309 kb on - strand, within ABID97_RS04020at 824.332 kb on + strand, within ABID97_RS04020at 824.333 kb on - strand, within ABID97_RS04020at 824.413 kb on + strand, within ABID97_RS04020at 824.413 kb on + strand, within ABID97_RS04020at 824.413 kb on + strand, within ABID97_RS04020at 824.414 kb on - strand, within ABID97_RS04020at 824.416 kb on + strand, within ABID97_RS04020at 824.575 kb on + strand, within ABID97_RS04020at 824.645 kb on - strand, within ABID97_RS04020at 824.944 kb on + strand, within ABID97_RS04020at 824.993 kb on - strand, within ABID97_RS04020at 825.188 kb on + strand, within ABID97_RS04020at 825.188 kb on + strand, within ABID97_RS04020at 825.189 kb on - strand, within ABID97_RS04020at 825.189 kb on - strand, within ABID97_RS04020at 825.271 kb on + strand, within ABID97_RS04020at 825.272 kb on - strand, within ABID97_RS04020at 825.272 kb on - strand, within ABID97_RS04020at 825.272 kb on - strand, within ABID97_RS04020at 825.272 kb on - strand, within ABID97_RS04020at 825.358 kb on + strand, within ABID97_RS04020at 826.072 kb on - strand, within ABID97_RS04025at 826.185 kb on + strand, within ABID97_RS04025at 826.185 kb on + strand, within ABID97_RS04025at 826.338 kb on + strand, within ABID97_RS04025at 826.338 kb on + strand, within ABID97_RS04025at 826.411 kb on - strand, within ABID97_RS04025at 826.476 kb on + strand, within ABID97_RS04025at 826.476 kb on + strand, within ABID97_RS04025

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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823,881 - -1.1
823,984 + +1.0
824,041 + -0.4
824,041 + +1.2
824,041 + -0.2
824,147 - -0.3
824,173 + -0.5
824,173 + -0.1
824,212 + ABID97_RS04020 0.12 +0.1
824,308 + ABID97_RS04020 0.18 -0.1
824,308 + ABID97_RS04020 0.18 -0.4
824,309 - ABID97_RS04020 0.18 -0.3
824,309 - ABID97_RS04020 0.18 +1.6
824,309 - ABID97_RS04020 0.18 +2.6
824,309 - ABID97_RS04020 0.18 -0.4
824,332 + ABID97_RS04020 0.19 -0.6
824,333 - ABID97_RS04020 0.19 -0.0
824,413 + ABID97_RS04020 0.24 -0.3
824,413 + ABID97_RS04020 0.24 +0.1
824,413 + ABID97_RS04020 0.24 +1.1
824,414 - ABID97_RS04020 0.24 -0.0
824,416 + ABID97_RS04020 0.24 -0.6
824,575 + ABID97_RS04020 0.34 +2.1
824,645 - ABID97_RS04020 0.38 -0.4
824,944 + ABID97_RS04020 0.57 -0.3
824,993 - ABID97_RS04020 0.60 -0.3
825,188 + ABID97_RS04020 0.72 -0.2
825,188 + ABID97_RS04020 0.72 +0.1
825,189 - ABID97_RS04020 0.72 -0.2
825,189 - ABID97_RS04020 0.72 -0.7
825,271 + ABID97_RS04020 0.77 -0.8
825,272 - ABID97_RS04020 0.77 +0.1
825,272 - ABID97_RS04020 0.77 +0.2
825,272 - ABID97_RS04020 0.77 -0.6
825,272 - ABID97_RS04020 0.77 +0.2
825,358 + ABID97_RS04020 0.82 -0.4
826,072 - ABID97_RS04025 0.28 -0.2
826,185 + ABID97_RS04025 0.39 -0.1
826,185 + ABID97_RS04025 0.39 -0.1
826,338 + ABID97_RS04025 0.53 -0.9
826,338 + ABID97_RS04025 0.53 -1.2
826,411 - ABID97_RS04025 0.60 +0.6
826,476 + ABID97_RS04025 0.66 -0.3
826,476 + ABID97_RS04025 0.66 -0.3

Or see this region's nucleotide sequence