Experiment: D,L-Malic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS03065 and ABID97_RS03070 overlap by 1 nucleotides ABID97_RS03070 and ABID97_RS03075 are separated by 124 nucleotides ABID97_RS03075 and ABID97_RS03080 overlap by 4 nucleotides
ABID97_RS03065: ABID97_RS03065 - ABC transporter ATP-binding protein, at 620,524 to 621,225
_RS03065
ABID97_RS03070: ABID97_RS03070 - ABC transporter ATP-binding protein, at 621,225 to 621,971
_RS03070
ABID97_RS03075: ABID97_RS03075 - branched-chain amino acid ABC transporter permease, at 622,096 to 623,085
_RS03075
ABID97_RS03080: ABID97_RS03080 - branched-chain amino acid ABC transporter permease, at 623,082 to 623,954
_RS03080
Position (kb) 622
623
624 Strain fitness (log2 ratio) -2
-1
0
1
2 at 621.195 kb on - strand at 621.197 kb on + strand at 621.197 kb on + strand at 621.197 kb on + strand at 621.198 kb on - strand at 621.198 kb on - strand at 621.245 kb on - strand at 622.440 kb on - strand, within ABID97_RS03075 at 622.440 kb on - strand, within ABID97_RS03075 at 622.545 kb on - strand, within ABID97_RS03075 at 622.545 kb on - strand, within ABID97_RS03075 at 622.628 kb on + strand, within ABID97_RS03075 at 622.628 kb on + strand, within ABID97_RS03075 at 622.628 kb on + strand, within ABID97_RS03075 at 622.628 kb on + strand, within ABID97_RS03075 at 622.629 kb on - strand, within ABID97_RS03075 at 622.634 kb on + strand, within ABID97_RS03075 at 622.634 kb on + strand, within ABID97_RS03075 at 622.634 kb on + strand, within ABID97_RS03075 at 622.634 kb on + strand, within ABID97_RS03075 at 622.635 kb on - strand, within ABID97_RS03075 at 622.635 kb on - strand, within ABID97_RS03075 at 622.635 kb on - strand, within ABID97_RS03075 at 622.635 kb on - strand, within ABID97_RS03075 at 622.766 kb on + strand, within ABID97_RS03075 at 622.766 kb on + strand, within ABID97_RS03075 at 622.848 kb on - strand, within ABID97_RS03075 at 622.862 kb on + strand, within ABID97_RS03075 at 622.863 kb on - strand, within ABID97_RS03075 at 622.971 kb on - strand, within ABID97_RS03075 at 622.971 kb on - strand, within ABID97_RS03075 at 623.056 kb on - strand at 623.143 kb on + strand at 623.476 kb on + strand, within ABID97_RS03080 at 623.477 kb on - strand, within ABID97_RS03080 at 623.477 kb on - strand, within ABID97_RS03080 at 623.477 kb on - strand, within ABID97_RS03080 at 623.534 kb on - strand, within ABID97_RS03080 at 623.650 kb on + strand, within ABID97_RS03080 at 623.650 kb on + strand, within ABID97_RS03080 at 623.651 kb on - strand, within ABID97_RS03080 at 623.686 kb on + strand, within ABID97_RS03080 at 623.692 kb on + strand, within ABID97_RS03080 at 623.693 kb on - strand, within ABID97_RS03080 at 623.719 kb on + strand, within ABID97_RS03080 at 623.719 kb on + strand, within ABID97_RS03080 at 623.806 kb on + strand, within ABID97_RS03080 at 623.806 kb on + strand, within ABID97_RS03080 at 623.806 kb on + strand, within ABID97_RS03080 at 623.807 kb on - strand, within ABID97_RS03080 at 623.807 kb on - strand, within ABID97_RS03080 at 623.807 kb on - strand, within ABID97_RS03080 at 623.821 kb on + strand, within ABID97_RS03080 at 623.822 kb on + strand, within ABID97_RS03080 at 623.822 kb on - strand, within ABID97_RS03080
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Malic Acid (C) remove 621,195 - -0.1 621,197 + -0.1 621,197 + -0.2 621,197 + +0.8 621,198 - -0.3 621,198 - -0.7 621,245 - -0.1 622,440 - ABID97_RS03075 0.35 -1.0 622,440 - ABID97_RS03075 0.35 +1.8 622,545 - ABID97_RS03075 0.45 -0.2 622,545 - ABID97_RS03075 0.45 -0.1 622,628 + ABID97_RS03075 0.54 -0.2 622,628 + ABID97_RS03075 0.54 -0.9 622,628 + ABID97_RS03075 0.54 +0.1 622,628 + ABID97_RS03075 0.54 +1.6 622,629 - ABID97_RS03075 0.54 +0.9 622,634 + ABID97_RS03075 0.54 -0.0 622,634 + ABID97_RS03075 0.54 -0.2 622,634 + ABID97_RS03075 0.54 -0.5 622,634 + ABID97_RS03075 0.54 -0.2 622,635 - ABID97_RS03075 0.54 -0.1 622,635 - ABID97_RS03075 0.54 -0.6 622,635 - ABID97_RS03075 0.54 -0.1 622,635 - ABID97_RS03075 0.54 +0.2 622,766 + ABID97_RS03075 0.68 +0.6 622,766 + ABID97_RS03075 0.68 -0.5 622,848 - ABID97_RS03075 0.76 -0.6 622,862 + ABID97_RS03075 0.77 -1.9 622,863 - ABID97_RS03075 0.77 -0.0 622,971 - ABID97_RS03075 0.88 -0.5 622,971 - ABID97_RS03075 0.88 -0.2 623,056 - +0.3 623,143 + -0.5 623,476 + ABID97_RS03080 0.45 +0.5 623,477 - ABID97_RS03080 0.45 +0.9 623,477 - ABID97_RS03080 0.45 -0.3 623,477 - ABID97_RS03080 0.45 +0.1 623,534 - ABID97_RS03080 0.52 -0.3 623,650 + ABID97_RS03080 0.65 -0.2 623,650 + ABID97_RS03080 0.65 +0.4 623,651 - ABID97_RS03080 0.65 -0.4 623,686 + ABID97_RS03080 0.69 -0.2 623,692 + ABID97_RS03080 0.70 -0.1 623,693 - ABID97_RS03080 0.70 -0.5 623,719 + ABID97_RS03080 0.73 -0.4 623,719 + ABID97_RS03080 0.73 -0.6 623,806 + ABID97_RS03080 0.83 +0.3 623,806 + ABID97_RS03080 0.83 -0.1 623,806 + ABID97_RS03080 0.83 -0.2 623,807 - ABID97_RS03080 0.83 -0.4 623,807 - ABID97_RS03080 0.83 +0.3 623,807 - ABID97_RS03080 0.83 -2.1 623,821 + ABID97_RS03080 0.85 -0.2 623,822 + ABID97_RS03080 0.85 -0.5 623,822 - ABID97_RS03080 0.85 -0.0
Or see this region's nucleotide sequence