Experiment: D,L-Malic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS02145 and ABID97_RS02150 are separated by 7 nucleotides ABID97_RS02150 and ABID97_RS02155 are separated by 44 nucleotides ABID97_RS02155 and ABID97_RS02160 overlap by 4 nucleotides
ABID97_RS02145: ABID97_RS02145 - DegT/DnrJ/EryC1/StrS family aminotransferase, at 432,121 to 433,284
_RS02145
ABID97_RS02150: ABID97_RS02150 - class I SAM-dependent methyltransferase, at 433,292 to 433,972
_RS02150
ABID97_RS02155: ABID97_RS02155 - glycosyltransferase family 4 protein, at 434,017 to 435,243
_RS02155
ABID97_RS02160: ABID97_RS02160 - UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing), at 435,240 to 436,331
_RS02160
Position (kb) 434
435
436 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 433.519 kb on - strand, within ABID97_RS02150 at 433.519 kb on - strand, within ABID97_RS02150 at 433.698 kb on - strand, within ABID97_RS02150 at 433.924 kb on - strand at 433.960 kb on - strand at 433.960 kb on - strand at 434.078 kb on + strand at 434.079 kb on - strand at 434.079 kb on - strand at 434.134 kb on + strand at 434.259 kb on - strand, within ABID97_RS02155 at 434.259 kb on - strand, within ABID97_RS02155 at 434.321 kb on + strand, within ABID97_RS02155 at 434.322 kb on - strand, within ABID97_RS02155 at 434.322 kb on - strand, within ABID97_RS02155 at 434.386 kb on + strand, within ABID97_RS02155 at 434.386 kb on + strand, within ABID97_RS02155 at 434.387 kb on - strand, within ABID97_RS02155 at 434.387 kb on - strand, within ABID97_RS02155 at 434.387 kb on - strand, within ABID97_RS02155 at 434.387 kb on - strand, within ABID97_RS02155 at 434.387 kb on - strand, within ABID97_RS02155 at 434.387 kb on - strand, within ABID97_RS02155 at 434.387 kb on - strand, within ABID97_RS02155 at 434.540 kb on + strand, within ABID97_RS02155 at 434.540 kb on + strand, within ABID97_RS02155 at 434.540 kb on + strand, within ABID97_RS02155 at 434.541 kb on - strand, within ABID97_RS02155 at 434.655 kb on + strand, within ABID97_RS02155 at 434.864 kb on - strand, within ABID97_RS02155 at 434.864 kb on - strand, within ABID97_RS02155 at 434.864 kb on - strand, within ABID97_RS02155 at 434.903 kb on + strand, within ABID97_RS02155 at 434.904 kb on - strand, within ABID97_RS02155 at 434.904 kb on - strand, within ABID97_RS02155 at 434.904 kb on - strand, within ABID97_RS02155 at 434.904 kb on - strand, within ABID97_RS02155 at 434.904 kb on - strand, within ABID97_RS02155 at 434.908 kb on - strand, within ABID97_RS02155 at 434.908 kb on - strand, within ABID97_RS02155 at 435.024 kb on - strand, within ABID97_RS02155 at 435.024 kb on - strand, within ABID97_RS02155 at 435.109 kb on + strand, within ABID97_RS02155 at 435.176 kb on + strand at 435.176 kb on + strand at 435.176 kb on + strand at 435.177 kb on - strand at 435.218 kb on + strand at 435.323 kb on + strand at 435.399 kb on + strand, within ABID97_RS02160 at 435.828 kb on + strand, within ABID97_RS02160 at 435.828 kb on + strand, within ABID97_RS02160 at 435.828 kb on + strand, within ABID97_RS02160 at 435.864 kb on - strand, within ABID97_RS02160 at 435.864 kb on - strand, within ABID97_RS02160 at 435.864 kb on - strand, within ABID97_RS02160 at 435.868 kb on - strand, within ABID97_RS02160 at 435.868 kb on - strand, within ABID97_RS02160 at 436.041 kb on - strand, within ABID97_RS02160 at 436.041 kb on - strand, within ABID97_RS02160 at 436.041 kb on - strand, within ABID97_RS02160 at 436.041 kb on - strand, within ABID97_RS02160 at 436.051 kb on + strand, within ABID97_RS02160 at 436.173 kb on - strand, within ABID97_RS02160
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Malic Acid (C) remove 433,519 - ABID97_RS02150 0.33 -0.5 433,519 - ABID97_RS02150 0.33 -0.0 433,698 - ABID97_RS02150 0.60 +0.4 433,924 - -0.1 433,960 - +1.1 433,960 - +1.4 434,078 + +0.3 434,079 - +0.7 434,079 - +0.2 434,134 + -0.9 434,259 - ABID97_RS02155 0.20 -1.7 434,259 - ABID97_RS02155 0.20 -0.8 434,321 + ABID97_RS02155 0.25 -2.8 434,322 - ABID97_RS02155 0.25 -0.8 434,322 - ABID97_RS02155 0.25 -2.2 434,386 + ABID97_RS02155 0.30 -1.5 434,386 + ABID97_RS02155 0.30 -1.9 434,387 - ABID97_RS02155 0.30 -0.3 434,387 - ABID97_RS02155 0.30 -2.8 434,387 - ABID97_RS02155 0.30 -1.0 434,387 - ABID97_RS02155 0.30 -2.0 434,387 - ABID97_RS02155 0.30 -1.5 434,387 - ABID97_RS02155 0.30 -1.8 434,387 - ABID97_RS02155 0.30 -1.7 434,540 + ABID97_RS02155 0.43 -0.3 434,540 + ABID97_RS02155 0.43 -0.1 434,540 + ABID97_RS02155 0.43 -1.5 434,541 - ABID97_RS02155 0.43 -2.6 434,655 + ABID97_RS02155 0.52 -0.5 434,864 - ABID97_RS02155 0.69 -0.7 434,864 - ABID97_RS02155 0.69 -2.2 434,864 - ABID97_RS02155 0.69 -1.7 434,903 + ABID97_RS02155 0.72 -0.0 434,904 - ABID97_RS02155 0.72 -1.2 434,904 - ABID97_RS02155 0.72 -1.5 434,904 - ABID97_RS02155 0.72 -0.3 434,904 - ABID97_RS02155 0.72 -2.3 434,904 - ABID97_RS02155 0.72 -1.6 434,908 - ABID97_RS02155 0.73 -1.7 434,908 - ABID97_RS02155 0.73 -1.1 435,024 - ABID97_RS02155 0.82 +0.5 435,024 - ABID97_RS02155 0.82 -0.4 435,109 + ABID97_RS02155 0.89 -1.4 435,176 + -0.5 435,176 + -0.1 435,176 + -0.5 435,177 - -0.7 435,218 + -0.1 435,323 + -0.4 435,399 + ABID97_RS02160 0.15 -0.7 435,828 + ABID97_RS02160 0.54 -1.1 435,828 + ABID97_RS02160 0.54 -1.0 435,828 + ABID97_RS02160 0.54 -1.6 435,864 - ABID97_RS02160 0.57 -1.5 435,864 - ABID97_RS02160 0.57 -1.1 435,864 - ABID97_RS02160 0.57 -0.6 435,868 - ABID97_RS02160 0.58 -0.7 435,868 - ABID97_RS02160 0.58 -0.8 436,041 - ABID97_RS02160 0.73 -0.6 436,041 - ABID97_RS02160 0.73 -0.9 436,041 - ABID97_RS02160 0.73 -0.7 436,041 - ABID97_RS02160 0.73 -0.7 436,051 + ABID97_RS02160 0.74 -0.1 436,173 - ABID97_RS02160 0.85 -1.3
Or see this region's nucleotide sequence