Experiment: D,L-Malic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS01950 and ABID97_RS01955 are separated by 184 nucleotides ABID97_RS01955 and ABID97_RS01960 are separated by 69 nucleotides
ABID97_RS01950: ABID97_RS01950 - MFS transporter, at 385,470 to 386,756
_RS01950
ABID97_RS01955: ABID97_RS01955 - FadR/GntR family transcriptional regulator, at 386,941 to 387,717
_RS01955
ABID97_RS01960: ABID97_RS01960 - alpha-ketoglutarate dehydrogenase, at 387,787 to 390,455
_RS01960
Position (kb) 386
387
388 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 385.979 kb on - strand, within ABID97_RS01950 at 386.003 kb on - strand, within ABID97_RS01950 at 386.003 kb on - strand, within ABID97_RS01950 at 386.161 kb on + strand, within ABID97_RS01950 at 386.162 kb on - strand, within ABID97_RS01950 at 386.162 kb on - strand, within ABID97_RS01950 at 386.368 kb on + strand, within ABID97_RS01950 at 386.369 kb on - strand, within ABID97_RS01950 at 386.369 kb on - strand, within ABID97_RS01950 at 386.387 kb on - strand, within ABID97_RS01950 at 386.428 kb on + strand, within ABID97_RS01950 at 386.429 kb on - strand, within ABID97_RS01950 at 386.429 kb on - strand, within ABID97_RS01950 at 386.429 kb on - strand, within ABID97_RS01950 at 386.560 kb on + strand, within ABID97_RS01950 at 386.561 kb on - strand, within ABID97_RS01950 at 386.665 kb on + strand at 386.665 kb on + strand at 386.666 kb on - strand at 386.666 kb on - strand at 386.677 kb on + strand at 386.677 kb on + strand at 386.678 kb on - strand at 386.678 kb on - strand at 386.921 kb on + strand at 387.207 kb on - strand, within ABID97_RS01955 at 387.207 kb on - strand, within ABID97_RS01955 at 387.207 kb on - strand, within ABID97_RS01955 at 387.491 kb on + strand, within ABID97_RS01955 at 387.491 kb on + strand, within ABID97_RS01955 at 387.491 kb on + strand, within ABID97_RS01955 at 387.491 kb on + strand, within ABID97_RS01955 at 387.492 kb on - strand, within ABID97_RS01955 at 387.748 kb on - strand at 387.748 kb on - strand at 387.748 kb on - strand at 387.865 kb on - strand at 387.902 kb on + strand at 387.903 kb on - strand at 387.956 kb on + strand at 387.956 kb on + strand at 387.957 kb on - strand at 387.957 kb on - strand at 387.957 kb on - strand at 387.957 kb on - strand at 387.957 kb on - strand at 388.289 kb on + strand, within ABID97_RS01960 at 388.289 kb on + strand, within ABID97_RS01960 at 388.289 kb on + strand, within ABID97_RS01960 at 388.290 kb on - strand, within ABID97_RS01960 at 388.313 kb on + strand, within ABID97_RS01960 at 388.313 kb on + strand, within ABID97_RS01960 at 388.314 kb on - strand, within ABID97_RS01960 at 388.314 kb on - strand, within ABID97_RS01960 at 388.314 kb on - strand, within ABID97_RS01960 at 388.316 kb on + strand, within ABID97_RS01960 at 388.317 kb on - strand, within ABID97_RS01960 at 388.317 kb on - strand, within ABID97_RS01960 at 388.388 kb on + strand, within ABID97_RS01960 at 388.388 kb on + strand, within ABID97_RS01960 at 388.389 kb on - strand, within ABID97_RS01960 at 388.400 kb on + strand, within ABID97_RS01960 at 388.578 kb on - strand, within ABID97_RS01960 at 388.580 kb on + strand, within ABID97_RS01960 at 388.580 kb on + strand, within ABID97_RS01960 at 388.580 kb on + strand, within ABID97_RS01960 at 388.580 kb on + strand, within ABID97_RS01960 at 388.580 kb on + strand, within ABID97_RS01960 at 388.581 kb on - strand, within ABID97_RS01960 at 388.581 kb on - strand, within ABID97_RS01960 at 388.581 kb on - strand, within ABID97_RS01960 at 388.581 kb on - strand, within ABID97_RS01960 at 388.586 kb on + strand, within ABID97_RS01960 at 388.586 kb on + strand, within ABID97_RS01960 at 388.586 kb on + strand, within ABID97_RS01960 at 388.587 kb on - strand, within ABID97_RS01960 at 388.587 kb on - strand, within ABID97_RS01960 at 388.587 kb on - strand, within ABID97_RS01960 at 388.587 kb on - strand, within ABID97_RS01960 at 388.619 kb on + strand, within ABID97_RS01960 at 388.620 kb on - strand, within ABID97_RS01960 at 388.620 kb on - strand, within ABID97_RS01960
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Malic Acid (C) remove 385,979 - ABID97_RS01950 0.40 -1.5 386,003 - ABID97_RS01950 0.41 +0.0 386,003 - ABID97_RS01950 0.41 -1.1 386,161 + ABID97_RS01950 0.54 -0.8 386,162 - ABID97_RS01950 0.54 -1.0 386,162 - ABID97_RS01950 0.54 -0.7 386,368 + ABID97_RS01950 0.70 +0.7 386,369 - ABID97_RS01950 0.70 +0.9 386,369 - ABID97_RS01950 0.70 -0.4 386,387 - ABID97_RS01950 0.71 +0.5 386,428 + ABID97_RS01950 0.74 -0.9 386,429 - ABID97_RS01950 0.75 -0.2 386,429 - ABID97_RS01950 0.75 +0.1 386,429 - ABID97_RS01950 0.75 -0.3 386,560 + ABID97_RS01950 0.85 -0.2 386,561 - ABID97_RS01950 0.85 +0.6 386,665 + -2.1 386,665 + +1.4 386,666 - -0.2 386,666 - -0.1 386,677 + +0.2 386,677 + +0.5 386,678 - +0.1 386,678 - -0.1 386,921 + -0.5 387,207 - ABID97_RS01955 0.34 -2.8 387,207 - ABID97_RS01955 0.34 -3.6 387,207 - ABID97_RS01955 0.34 -1.6 387,491 + ABID97_RS01955 0.71 -3.8 387,491 + ABID97_RS01955 0.71 -2.0 387,491 + ABID97_RS01955 0.71 -3.5 387,491 + ABID97_RS01955 0.71 -4.7 387,492 - ABID97_RS01955 0.71 -1.5 387,748 - -0.6 387,748 - -0.2 387,748 - -0.2 387,865 - -0.7 387,902 + -1.3 387,903 - +0.1 387,956 + -0.4 387,956 + +0.1 387,957 - -0.2 387,957 - +0.3 387,957 - -1.7 387,957 - -0.7 387,957 - -0.4 388,289 + ABID97_RS01960 0.19 -0.3 388,289 + ABID97_RS01960 0.19 -1.4 388,289 + ABID97_RS01960 0.19 +0.0 388,290 - ABID97_RS01960 0.19 -0.3 388,313 + ABID97_RS01960 0.20 -1.4 388,313 + ABID97_RS01960 0.20 +0.2 388,314 - ABID97_RS01960 0.20 +0.4 388,314 - ABID97_RS01960 0.20 -0.1 388,314 - ABID97_RS01960 0.20 +0.2 388,316 + ABID97_RS01960 0.20 +0.1 388,317 - ABID97_RS01960 0.20 -0.1 388,317 - ABID97_RS01960 0.20 +0.1 388,388 + ABID97_RS01960 0.23 -0.1 388,388 + ABID97_RS01960 0.23 -0.3 388,389 - ABID97_RS01960 0.23 -0.3 388,400 + ABID97_RS01960 0.23 -0.0 388,578 - ABID97_RS01960 0.30 -0.7 388,580 + ABID97_RS01960 0.30 +0.6 388,580 + ABID97_RS01960 0.30 +0.4 388,580 + ABID97_RS01960 0.30 -0.1 388,580 + ABID97_RS01960 0.30 +0.0 388,580 + ABID97_RS01960 0.30 -1.4 388,581 - ABID97_RS01960 0.30 +0.6 388,581 - ABID97_RS01960 0.30 -0.5 388,581 - ABID97_RS01960 0.30 +0.1 388,581 - ABID97_RS01960 0.30 -0.3 388,586 + ABID97_RS01960 0.30 -1.4 388,586 + ABID97_RS01960 0.30 -1.5 388,586 + ABID97_RS01960 0.30 -0.1 388,587 - ABID97_RS01960 0.30 +0.2 388,587 - ABID97_RS01960 0.30 +2.2 388,587 - ABID97_RS01960 0.30 +0.0 388,587 - ABID97_RS01960 0.30 +1.0 388,619 + ABID97_RS01960 0.31 +2.2 388,620 - ABID97_RS01960 0.31 -0.7 388,620 - ABID97_RS01960 0.31 -0.8
Or see this region's nucleotide sequence