Experiment: D,L-Malic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS01925 and ABID97_RS01930 are separated by 18 nucleotides ABID97_RS01930 and ABID97_RS01935 are separated by 225 nucleotides ABID97_RS01935 and ABID97_RS01940 are separated by 3 nucleotides
ABID97_RS01925: ABID97_RS01925 - 2-oxo-tetronate isomerase, at 380,493 to 381,311
_RS01925
ABID97_RS01930: ABID97_RS01930 - aldolase, at 381,330 to 381,995
_RS01930
ABID97_RS01935: ABID97_RS01935 - 3-oxo-tetronate kinase, at 382,221 to 383,492
_RS01935
ABID97_RS01940: ABID97_RS01940 - D-erythronate dehydrogenase, at 383,496 to 384,512
_RS01940
Position (kb) 382
383
384 Strain fitness (log2 ratio) -1
0
1 at 381.278 kb on - strand at 381.322 kb on + strand at 381.634 kb on + strand, within ABID97_RS01930 at 381.635 kb on - strand, within ABID97_RS01930 at 381.754 kb on + strand, within ABID97_RS01930 at 381.754 kb on + strand, within ABID97_RS01930 at 381.755 kb on - strand, within ABID97_RS01930 at 381.869 kb on + strand, within ABID97_RS01930 at 381.870 kb on - strand, within ABID97_RS01930 at 381.900 kb on + strand, within ABID97_RS01930 at 381.900 kb on + strand, within ABID97_RS01930 at 381.901 kb on - strand, within ABID97_RS01930 at 382.125 kb on + strand at 382.235 kb on + strand at 382.235 kb on + strand at 382.235 kb on + strand at 382.235 kb on + strand at 382.235 kb on + strand at 382.235 kb on + strand at 382.236 kb on - strand at 382.236 kb on - strand at 382.558 kb on + strand, within ABID97_RS01935 at 382.559 kb on - strand, within ABID97_RS01935 at 383.104 kb on + strand, within ABID97_RS01935 at 383.248 kb on + strand, within ABID97_RS01935 at 383.248 kb on + strand, within ABID97_RS01935 at 383.248 kb on + strand, within ABID97_RS01935 at 383.248 kb on + strand, within ABID97_RS01935 at 383.248 kb on + strand, within ABID97_RS01935 at 383.248 kb on + strand, within ABID97_RS01935 at 383.248 kb on + strand, within ABID97_RS01935 at 383.249 kb on - strand, within ABID97_RS01935 at 383.249 kb on - strand, within ABID97_RS01935 at 384.046 kb on + strand, within ABID97_RS01940 at 384.047 kb on - strand, within ABID97_RS01940 at 384.047 kb on - strand, within ABID97_RS01940 at 384.282 kb on - strand, within ABID97_RS01940
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Malic Acid (C) remove 381,278 - -0.9 381,322 + +0.1 381,634 + ABID97_RS01930 0.46 +0.0 381,635 - ABID97_RS01930 0.46 +1.6 381,754 + ABID97_RS01930 0.64 +0.3 381,754 + ABID97_RS01930 0.64 +0.8 381,755 - ABID97_RS01930 0.64 +0.0 381,869 + ABID97_RS01930 0.81 +0.5 381,870 - ABID97_RS01930 0.81 -0.6 381,900 + ABID97_RS01930 0.86 -0.1 381,900 + ABID97_RS01930 0.86 -0.1 381,901 - ABID97_RS01930 0.86 +0.4 382,125 + -0.1 382,235 + -0.1 382,235 + -0.5 382,235 + -0.3 382,235 + -0.7 382,235 + +0.2 382,235 + -0.5 382,236 - -1.1 382,236 - +0.1 382,558 + ABID97_RS01935 0.26 -0.8 382,559 - ABID97_RS01935 0.27 -1.0 383,104 + ABID97_RS01935 0.69 -1.3 383,248 + ABID97_RS01935 0.81 -0.7 383,248 + ABID97_RS01935 0.81 -1.2 383,248 + ABID97_RS01935 0.81 -0.7 383,248 + ABID97_RS01935 0.81 -1.2 383,248 + ABID97_RS01935 0.81 -1.0 383,248 + ABID97_RS01935 0.81 -1.0 383,248 + ABID97_RS01935 0.81 -1.2 383,249 - ABID97_RS01935 0.81 -1.1 383,249 - ABID97_RS01935 0.81 -1.3 384,046 + ABID97_RS01940 0.54 -0.4 384,047 - ABID97_RS01940 0.54 -0.1 384,047 - ABID97_RS01940 0.54 +0.6 384,282 - ABID97_RS01940 0.77 +0.3
Or see this region's nucleotide sequence