Experiment: D,L-Malic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS01425 and ABID97_RS01430 are separated by 1 nucleotides ABID97_RS01430 and ABID97_RS01435 overlap by 4 nucleotides ABID97_RS01435 and ABID97_RS01440 are separated by 4 nucleotides
ABID97_RS01425: ABID97_RS01425 - bifunctional salicylyl-CoA 5-hydroxylase/oxidoreductase, at 287,599 to 289,986
_RS01425
ABID97_RS01430: ABID97_RS01430 - MarR family transcriptional regulator, at 289,988 to 290,464
_RS01430
ABID97_RS01435: ABID97_RS01435 - enoyl-CoA hydratase family protein, at 290,461 to 291,315
_RS01435
ABID97_RS01440: ABID97_RS01440 - acyl-CoA dehydrogenase family protein, at 291,320 to 292,513
_RS01440
Position (kb) 289
290
291 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 289.051 kb on + strand, within ABID97_RS01425 at 289.052 kb on - strand, within ABID97_RS01425 at 289.052 kb on - strand, within ABID97_RS01425 at 289.052 kb on - strand, within ABID97_RS01425 at 289.372 kb on + strand, within ABID97_RS01425 at 289.654 kb on + strand, within ABID97_RS01425 at 289.666 kb on + strand, within ABID97_RS01425 at 289.667 kb on - strand, within ABID97_RS01425 at 289.667 kb on - strand, within ABID97_RS01425 at 289.879 kb on + strand at 290.471 kb on - strand at 290.471 kb on - strand at 290.521 kb on + strand at 290.617 kb on + strand, within ABID97_RS01435 at 290.618 kb on - strand, within ABID97_RS01435 at 290.618 kb on - strand, within ABID97_RS01435 at 290.653 kb on + strand, within ABID97_RS01435 at 290.940 kb on - strand, within ABID97_RS01435 at 290.940 kb on - strand, within ABID97_RS01435
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Malic Acid (C) remove 289,051 + ABID97_RS01425 0.61 -0.8 289,052 - ABID97_RS01425 0.61 +0.3 289,052 - ABID97_RS01425 0.61 +0.4 289,052 - ABID97_RS01425 0.61 -1.2 289,372 + ABID97_RS01425 0.74 -0.1 289,654 + ABID97_RS01425 0.86 +0.6 289,666 + ABID97_RS01425 0.87 -0.2 289,667 - ABID97_RS01425 0.87 +0.6 289,667 - ABID97_RS01425 0.87 +0.0 289,879 + +0.4 290,471 - +0.2 290,471 - +0.4 290,521 + +0.0 290,617 + ABID97_RS01435 0.18 -0.2 290,618 - ABID97_RS01435 0.18 -0.0 290,618 - ABID97_RS01435 0.18 +0.2 290,653 + ABID97_RS01435 0.22 +0.3 290,940 - ABID97_RS01435 0.56 +0.4 290,940 - ABID97_RS01435 0.56 -2.9
Or see this region's nucleotide sequence