Strain Fitness in Variovorax sp. OAS795 around ABID97_RS01420

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS01410 and ABID97_RS01415 are separated by 71 nucleotidesABID97_RS01415 and ABID97_RS01420 are separated by 12 nucleotidesABID97_RS01420 and ABID97_RS01425 are separated by 116 nucleotides ABID97_RS01410: ABID97_RS01410 - tripartite tricarboxylate transporter substrate binding protein, at 284,793 to 285,806 _RS01410 ABID97_RS01415: ABID97_RS01415 - DUF1840 domain-containing protein, at 285,878 to 286,201 _RS01415 ABID97_RS01420: ABID97_RS01420 - cyclopropane-fatty-acyl-phospholipid synthase family protein, at 286,214 to 287,482 _RS01420 ABID97_RS01425: ABID97_RS01425 - bifunctional salicylyl-CoA 5-hydroxylase/oxidoreductase, at 287,599 to 289,986 _RS01425 Position (kb) 286 287 288Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 285.241 kb on + strand, within ABID97_RS01410at 285.242 kb on - strand, within ABID97_RS01410at 285.242 kb on - strand, within ABID97_RS01410at 285.242 kb on - strand, within ABID97_RS01410at 285.242 kb on - strand, within ABID97_RS01410at 285.242 kb on - strand, within ABID97_RS01410at 285.259 kb on - strand, within ABID97_RS01410at 285.375 kb on + strand, within ABID97_RS01410at 285.375 kb on + strand, within ABID97_RS01410at 285.376 kb on - strand, within ABID97_RS01410at 285.376 kb on - strand, within ABID97_RS01410at 285.376 kb on - strand, within ABID97_RS01410at 286.006 kb on - strand, within ABID97_RS01415at 286.221 kb on + strandat 286.221 kb on + strandat 286.221 kb on + strandat 286.222 kb on - strandat 286.222 kb on - strandat 286.222 kb on - strandat 286.222 kb on - strandat 286.227 kb on + strandat 286.227 kb on + strandat 286.228 kb on - strandat 286.228 kb on - strandat 286.228 kb on - strandat 286.228 kb on - strandat 286.228 kb on - strandat 286.228 kb on - strandat 286.246 kb on - strandat 286.266 kb on - strandat 286.491 kb on + strand, within ABID97_RS01420at 286.492 kb on - strand, within ABID97_RS01420at 286.492 kb on - strand, within ABID97_RS01420at 286.492 kb on - strand, within ABID97_RS01420at 286.492 kb on - strand, within ABID97_RS01420at 286.593 kb on + strand, within ABID97_RS01420at 286.593 kb on + strand, within ABID97_RS01420at 286.593 kb on + strand, within ABID97_RS01420at 286.593 kb on + strand, within ABID97_RS01420at 286.593 kb on + strand, within ABID97_RS01420at 286.593 kb on + strand, within ABID97_RS01420at 286.594 kb on - strand, within ABID97_RS01420at 286.594 kb on - strand, within ABID97_RS01420at 286.594 kb on - strand, within ABID97_RS01420at 286.594 kb on - strand, within ABID97_RS01420at 286.594 kb on - strand, within ABID97_RS01420at 286.594 kb on - strand, within ABID97_RS01420at 286.594 kb on - strand, within ABID97_RS01420at 286.594 kb on - strand, within ABID97_RS01420at 286.635 kb on + strand, within ABID97_RS01420at 286.713 kb on + strand, within ABID97_RS01420at 286.713 kb on + strand, within ABID97_RS01420at 286.713 kb on + strand, within ABID97_RS01420at 286.713 kb on + strand, within ABID97_RS01420at 286.714 kb on - strand, within ABID97_RS01420at 286.714 kb on - strand, within ABID97_RS01420at 286.714 kb on - strand, within ABID97_RS01420at 286.911 kb on + strand, within ABID97_RS01420at 287.059 kb on - strand, within ABID97_RS01420at 287.059 kb on - strand, within ABID97_RS01420at 287.070 kb on + strand, within ABID97_RS01420at 287.070 kb on + strand, within ABID97_RS01420at 287.070 kb on + strand, within ABID97_RS01420at 287.101 kb on - strand, within ABID97_RS01420at 287.286 kb on - strand, within ABID97_RS01420at 287.301 kb on + strand, within ABID97_RS01420at 287.302 kb on - strand, within ABID97_RS01420at 287.302 kb on - strand, within ABID97_RS01420at 287.302 kb on - strand, within ABID97_RS01420at 287.468 kb on + strandat 287.496 kb on + strandat 287.497 kb on - strandat 287.552 kb on + strandat 287.553 kb on - strandat 287.553 kb on - strandat 287.555 kb on + strandat 287.556 kb on - strandat 287.556 kb on - strandat 287.556 kb on - strandat 288.034 kb on + strand, within ABID97_RS01425at 288.035 kb on - strand, within ABID97_RS01425at 288.275 kb on + strand, within ABID97_RS01425at 288.350 kb on - strand, within ABID97_RS01425at 288.350 kb on - strand, within ABID97_RS01425

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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285,241 + ABID97_RS01410 0.44 -0.4
285,242 - ABID97_RS01410 0.44 -0.5
285,242 - ABID97_RS01410 0.44 +0.1
285,242 - ABID97_RS01410 0.44 -1.0
285,242 - ABID97_RS01410 0.44 -0.4
285,242 - ABID97_RS01410 0.44 +0.1
285,259 - ABID97_RS01410 0.46 +0.0
285,375 + ABID97_RS01410 0.57 -0.4
285,375 + ABID97_RS01410 0.57 +0.2
285,376 - ABID97_RS01410 0.57 +0.4
285,376 - ABID97_RS01410 0.57 -0.2
285,376 - ABID97_RS01410 0.57 +1.3
286,006 - ABID97_RS01415 0.40 -0.0
286,221 + -0.3
286,221 + -1.0
286,221 + -1.6
286,222 - -1.9
286,222 - -1.1
286,222 - -1.8
286,222 - -1.9
286,227 + -1.7
286,227 + +0.2
286,228 - -2.6
286,228 - -2.0
286,228 - -2.1
286,228 - -2.6
286,228 - -0.9
286,228 - -1.3
286,246 - -1.7
286,266 - -3.9
286,491 + ABID97_RS01420 0.22 -0.5
286,492 - ABID97_RS01420 0.22 -0.9
286,492 - ABID97_RS01420 0.22 -2.2
286,492 - ABID97_RS01420 0.22 -2.1
286,492 - ABID97_RS01420 0.22 -2.3
286,593 + ABID97_RS01420 0.30 -1.5
286,593 + ABID97_RS01420 0.30 -0.9
286,593 + ABID97_RS01420 0.30 -3.6
286,593 + ABID97_RS01420 0.30 -1.4
286,593 + ABID97_RS01420 0.30 -0.8
286,593 + ABID97_RS01420 0.30 -1.8
286,594 - ABID97_RS01420 0.30 -1.1
286,594 - ABID97_RS01420 0.30 -0.6
286,594 - ABID97_RS01420 0.30 -0.4
286,594 - ABID97_RS01420 0.30 -2.2
286,594 - ABID97_RS01420 0.30 -2.3
286,594 - ABID97_RS01420 0.30 -2.1
286,594 - ABID97_RS01420 0.30 -1.0
286,594 - ABID97_RS01420 0.30 -2.3
286,635 + ABID97_RS01420 0.33 -2.9
286,713 + ABID97_RS01420 0.39 -0.8
286,713 + ABID97_RS01420 0.39 -2.2
286,713 + ABID97_RS01420 0.39 -1.8
286,713 + ABID97_RS01420 0.39 -2.8
286,714 - ABID97_RS01420 0.39 -1.5
286,714 - ABID97_RS01420 0.39 -0.6
286,714 - ABID97_RS01420 0.39 -1.3
286,911 + ABID97_RS01420 0.55 -1.7
287,059 - ABID97_RS01420 0.67 -1.1
287,059 - ABID97_RS01420 0.67 -1.3
287,070 + ABID97_RS01420 0.67 -1.5
287,070 + ABID97_RS01420 0.67 -0.7
287,070 + ABID97_RS01420 0.67 -1.7
287,101 - ABID97_RS01420 0.70 -2.4
287,286 - ABID97_RS01420 0.84 -2.3
287,301 + ABID97_RS01420 0.86 -0.2
287,302 - ABID97_RS01420 0.86 -2.0
287,302 - ABID97_RS01420 0.86 -0.7
287,302 - ABID97_RS01420 0.86 -1.7
287,468 + -2.2
287,496 + -0.4
287,497 - -0.2
287,552 + +0.7
287,553 - -0.1
287,553 - +0.1
287,555 + -0.3
287,556 - +0.4
287,556 - -1.1
287,556 - -0.4
288,034 + ABID97_RS01425 0.18 -0.2
288,035 - ABID97_RS01425 0.18 +0.3
288,275 + ABID97_RS01425 0.28 +0.0
288,350 - ABID97_RS01425 0.31 -0.1
288,350 - ABID97_RS01425 0.31 +0.2

Or see this region's nucleotide sequence