Experiment: D,L-Malic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS01380 and ABID97_RS01385 are separated by 113 nucleotides ABID97_RS01385 and ABID97_RS01390 are separated by 2 nucleotides ABID97_RS01390 and ABID97_RS01395 are separated by 12 nucleotides
ABID97_RS01380: ABID97_RS01380 - LysR substrate-binding domain-containing protein, at 279,436 to 280,383
_RS01380
ABID97_RS01385: ABID97_RS01385 - thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha, at 280,497 to 281,522
_RS01385
ABID97_RS01390: ABID97_RS01390 - transketolase C-terminal domain-containing protein, at 281,525 to 282,481
_RS01390
ABID97_RS01395: ABID97_RS01395 - MarR family transcriptional regulator, at 282,494 to 282,916
_RS01395
Position (kb) 280
281
282 Strain fitness (log2 ratio) -1
0
1 at 280.169 kb on - strand, within ABID97_RS01380 at 280.169 kb on - strand, within ABID97_RS01380 at 280.223 kb on - strand, within ABID97_RS01380 at 280.315 kb on + strand at 280.420 kb on + strand at 280.420 kb on + strand at 280.421 kb on - strand at 280.611 kb on + strand, within ABID97_RS01385 at 280.752 kb on - strand, within ABID97_RS01385 at 280.752 kb on - strand, within ABID97_RS01385 at 281.256 kb on + strand, within ABID97_RS01385 at 281.256 kb on + strand, within ABID97_RS01385 at 281.257 kb on - strand, within ABID97_RS01385 at 281.296 kb on - strand, within ABID97_RS01385 at 281.540 kb on + strand at 281.541 kb on - strand at 281.642 kb on + strand, within ABID97_RS01390 at 281.984 kb on + strand, within ABID97_RS01390 at 281.985 kb on - strand, within ABID97_RS01390 at 281.985 kb on - strand, within ABID97_RS01390 at 281.985 kb on - strand, within ABID97_RS01390 at 281.985 kb on - strand, within ABID97_RS01390 at 281.985 kb on - strand, within ABID97_RS01390 at 282.029 kb on + strand, within ABID97_RS01390 at 282.405 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Malic Acid (C) remove 280,169 - ABID97_RS01380 0.77 -0.3 280,169 - ABID97_RS01380 0.77 -0.2 280,223 - ABID97_RS01380 0.83 -0.5 280,315 + -0.4 280,420 + +0.2 280,420 + +0.5 280,421 - -0.4 280,611 + ABID97_RS01385 0.11 -0.2 280,752 - ABID97_RS01385 0.25 +0.1 280,752 - ABID97_RS01385 0.25 -0.2 281,256 + ABID97_RS01385 0.74 -0.5 281,256 + ABID97_RS01385 0.74 -0.4 281,257 - ABID97_RS01385 0.74 +0.7 281,296 - ABID97_RS01385 0.78 -1.2 281,540 + -0.4 281,541 - -0.6 281,642 + ABID97_RS01390 0.12 -0.3 281,984 + ABID97_RS01390 0.48 -0.5 281,985 - ABID97_RS01390 0.48 -0.4 281,985 - ABID97_RS01390 0.48 +0.0 281,985 - ABID97_RS01390 0.48 +0.1 281,985 - ABID97_RS01390 0.48 +0.5 281,985 - ABID97_RS01390 0.48 -0.8 282,029 + ABID97_RS01390 0.53 +0.0 282,405 - +1.1
Or see this region's nucleotide sequence