Experiment: D,L-Malic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS00310 and ABID97_RS00315 are separated by 43 nucleotides ABID97_RS00315 and ABID97_RS00320 are separated by 176 nucleotides ABID97_RS00320 and ABID97_RS00325 are separated by 16 nucleotides
ABID97_RS00310: ABID97_RS00310 - tRNA-Arg, at 70,428 to 70,502
_RS00310
ABID97_RS00315: ABID97_RS00315 - TetR family transcriptional regulator, at 70,546 to 71,220
_RS00315
ABID97_RS00320: ABID97_RS00320 - efflux RND transporter periplasmic adaptor subunit, at 71,397 to 72,686
_RS00320
ABID97_RS00325: ABID97_RS00325 - efflux RND transporter permease subunit, at 72,703 to 75,864
_RS00325
Position (kb) 71
72
73 Strain fitness (log2 ratio) -2
-1
0
1
2 at 70.538 kb on - strand at 70.538 kb on - strand at 70.626 kb on - strand, within ABID97_RS00315 at 70.626 kb on - strand, within ABID97_RS00315 at 70.862 kb on + strand, within ABID97_RS00315 at 70.862 kb on + strand, within ABID97_RS00315 at 70.862 kb on + strand, within ABID97_RS00315 at 70.862 kb on + strand, within ABID97_RS00315 at 70.863 kb on - strand, within ABID97_RS00315 at 70.863 kb on - strand, within ABID97_RS00315 at 71.072 kb on + strand, within ABID97_RS00315 at 71.072 kb on + strand, within ABID97_RS00315 at 71.072 kb on + strand, within ABID97_RS00315 at 71.072 kb on + strand, within ABID97_RS00315 at 71.072 kb on + strand, within ABID97_RS00315 at 71.072 kb on + strand, within ABID97_RS00315 at 71.072 kb on + strand, within ABID97_RS00315 at 71.073 kb on - strand, within ABID97_RS00315 at 71.073 kb on - strand, within ABID97_RS00315 at 71.073 kb on - strand, within ABID97_RS00315 at 71.205 kb on + strand at 71.205 kb on + strand at 71.282 kb on + strand at 71.282 kb on + strand at 71.283 kb on - strand at 71.283 kb on - strand at 71.296 kb on + strand at 71.297 kb on - strand at 71.300 kb on + strand at 71.305 kb on + strand at 71.334 kb on + strand at 71.334 kb on + strand at 71.335 kb on - strand at 71.335 kb on - strand at 71.335 kb on - strand at 71.335 kb on - strand at 71.820 kb on + strand, within ABID97_RS00320 at 71.820 kb on + strand, within ABID97_RS00320 at 71.821 kb on - strand, within ABID97_RS00320 at 71.821 kb on - strand, within ABID97_RS00320 at 71.952 kb on + strand, within ABID97_RS00320 at 72.072 kb on + strand, within ABID97_RS00320 at 72.072 kb on + strand, within ABID97_RS00320 at 72.072 kb on + strand, within ABID97_RS00320 at 72.072 kb on + strand, within ABID97_RS00320 at 72.072 kb on + strand, within ABID97_RS00320 at 72.072 kb on + strand, within ABID97_RS00320 at 72.072 kb on + strand, within ABID97_RS00320 at 72.072 kb on + strand, within ABID97_RS00320 at 72.072 kb on + strand, within ABID97_RS00320 at 72.073 kb on - strand, within ABID97_RS00320 at 72.073 kb on - strand, within ABID97_RS00320 at 72.073 kb on - strand, within ABID97_RS00320 at 72.073 kb on - strand, within ABID97_RS00320 at 72.073 kb on - strand, within ABID97_RS00320 at 72.073 kb on - strand, within ABID97_RS00320 at 72.073 kb on - strand, within ABID97_RS00320 at 72.073 kb on - strand, within ABID97_RS00320 at 72.073 kb on - strand, within ABID97_RS00320 at 72.073 kb on - strand, within ABID97_RS00320 at 72.073 kb on - strand, within ABID97_RS00320 at 72.073 kb on - strand, within ABID97_RS00320 at 72.073 kb on - strand, within ABID97_RS00320 at 72.138 kb on + strand, within ABID97_RS00320 at 72.139 kb on - strand, within ABID97_RS00320 at 72.139 kb on - strand, within ABID97_RS00320 at 72.201 kb on + strand, within ABID97_RS00320 at 72.315 kb on + strand, within ABID97_RS00320 at 72.315 kb on + strand, within ABID97_RS00320 at 72.315 kb on + strand, within ABID97_RS00320 at 72.315 kb on + strand, within ABID97_RS00320 at 72.315 kb on + strand, within ABID97_RS00320 at 72.316 kb on - strand, within ABID97_RS00320 at 72.316 kb on - strand, within ABID97_RS00320 at 72.316 kb on - strand, within ABID97_RS00320 at 72.684 kb on + strand at 72.684 kb on + strand at 72.684 kb on + strand at 72.685 kb on - strand at 72.685 kb on - strand at 72.848 kb on - strand at 72.931 kb on + strand at 72.931 kb on + strand at 72.931 kb on + strand at 72.931 kb on + strand at 72.931 kb on + strand at 72.931 kb on + strand at 72.931 kb on + strand at 72.932 kb on - strand at 72.932 kb on - strand at 73.288 kb on + strand, within ABID97_RS00325 at 73.289 kb on - strand, within ABID97_RS00325 at 73.289 kb on - strand, within ABID97_RS00325 at 73.464 kb on + strand, within ABID97_RS00325 at 73.465 kb on - strand, within ABID97_RS00325 at 73.525 kb on + strand, within ABID97_RS00325
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Malic Acid (C) remove 70,538 - +1.6 70,538 - +1.0 70,626 - ABID97_RS00315 0.12 -2.6 70,626 - ABID97_RS00315 0.12 -1.6 70,862 + ABID97_RS00315 0.47 -0.9 70,862 + ABID97_RS00315 0.47 -1.3 70,862 + ABID97_RS00315 0.47 +0.0 70,862 + ABID97_RS00315 0.47 -2.6 70,863 - ABID97_RS00315 0.47 -1.6 70,863 - ABID97_RS00315 0.47 -1.5 71,072 + ABID97_RS00315 0.78 -2.4 71,072 + ABID97_RS00315 0.78 -1.0 71,072 + ABID97_RS00315 0.78 -0.7 71,072 + ABID97_RS00315 0.78 -1.4 71,072 + ABID97_RS00315 0.78 -1.9 71,072 + ABID97_RS00315 0.78 -2.4 71,072 + ABID97_RS00315 0.78 -2.2 71,073 - ABID97_RS00315 0.78 -2.6 71,073 - ABID97_RS00315 0.78 -1.8 71,073 - ABID97_RS00315 0.78 -1.1 71,205 + -0.5 71,205 + -1.4 71,282 + -0.1 71,282 + +0.2 71,283 - +1.8 71,283 - +0.0 71,296 + +0.1 71,297 - +0.2 71,300 + -0.8 71,305 + -0.3 71,334 + +0.6 71,334 + +1.6 71,335 - -0.2 71,335 - -0.6 71,335 - -0.4 71,335 - -0.8 71,820 + ABID97_RS00320 0.33 -0.2 71,820 + ABID97_RS00320 0.33 -0.0 71,821 - ABID97_RS00320 0.33 +0.2 71,821 - ABID97_RS00320 0.33 +0.2 71,952 + ABID97_RS00320 0.43 +1.6 72,072 + ABID97_RS00320 0.52 -0.1 72,072 + ABID97_RS00320 0.52 +0.3 72,072 + ABID97_RS00320 0.52 -0.1 72,072 + ABID97_RS00320 0.52 -0.2 72,072 + ABID97_RS00320 0.52 +0.3 72,072 + ABID97_RS00320 0.52 +0.1 72,072 + ABID97_RS00320 0.52 -0.2 72,072 + ABID97_RS00320 0.52 -0.2 72,072 + ABID97_RS00320 0.52 +0.0 72,073 - ABID97_RS00320 0.52 +0.2 72,073 - ABID97_RS00320 0.52 -0.0 72,073 - ABID97_RS00320 0.52 -0.7 72,073 - ABID97_RS00320 0.52 -0.1 72,073 - ABID97_RS00320 0.52 +0.1 72,073 - ABID97_RS00320 0.52 -0.2 72,073 - ABID97_RS00320 0.52 +0.7 72,073 - ABID97_RS00320 0.52 +0.3 72,073 - ABID97_RS00320 0.52 +0.7 72,073 - ABID97_RS00320 0.52 -0.3 72,073 - ABID97_RS00320 0.52 +0.1 72,073 - ABID97_RS00320 0.52 -0.2 72,073 - ABID97_RS00320 0.52 -0.1 72,138 + ABID97_RS00320 0.57 +0.1 72,139 - ABID97_RS00320 0.58 +0.2 72,139 - ABID97_RS00320 0.58 -0.0 72,201 + ABID97_RS00320 0.62 -0.3 72,315 + ABID97_RS00320 0.71 +0.2 72,315 + ABID97_RS00320 0.71 +0.5 72,315 + ABID97_RS00320 0.71 +0.0 72,315 + ABID97_RS00320 0.71 -0.4 72,315 + ABID97_RS00320 0.71 -0.3 72,316 - ABID97_RS00320 0.71 +0.3 72,316 - ABID97_RS00320 0.71 +0.0 72,316 - ABID97_RS00320 0.71 +1.3 72,684 + -0.3 72,684 + +0.8 72,684 + +0.1 72,685 - +1.0 72,685 - -0.7 72,848 - +0.1 72,931 + -0.0 72,931 + +1.7 72,931 + +1.0 72,931 + +1.0 72,931 + +0.1 72,931 + +0.0 72,931 + -0.3 72,932 - +0.3 72,932 - +0.9 73,288 + ABID97_RS00325 0.19 -1.0 73,289 - ABID97_RS00325 0.19 -0.3 73,289 - ABID97_RS00325 0.19 -0.2 73,464 + ABID97_RS00325 0.24 -0.4 73,465 - ABID97_RS00325 0.24 +0.0 73,525 + ABID97_RS00325 0.26 -0.6
Or see this region's nucleotide sequence