Experiment: D,L-Malic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS00285 and ABID97_RS00290 are separated by 2 nucleotides ABID97_RS00290 and ABID97_RS00295 are separated by 95 nucleotides ABID97_RS00295 and ABID97_RS00300 are separated by 286 nucleotides ABID97_RS00300 and ABID97_RS00305 are separated by 224 nucleotides
ABID97_RS00285: ABID97_RS00285 - 16S rRNA (cytidine(1402)-2'-O)-methyltransferase, at 63,389 to 64,342
_RS00285
ABID97_RS00290: ABID97_RS00290 - glutathione S-transferase, at 64,345 to 65,085
_RS00290
ABID97_RS00295: ABID97_RS00295 - hypothetical protein, at 65,181 to 65,549
_RS00295
ABID97_RS00300: ABID97_RS00300 - helix-turn-helix transcriptional regulator, at 65,836 to 66,078
_RS00300
ABID97_RS00305: ABID97_RS00305 - RNA-directed DNA polymerase, at 66,303 to 70,127
_RS00305
Position (kb) 65
66 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 64.287 kb on - strand at 64.287 kb on - strand at 64.287 kb on - strand at 64.340 kb on + strand at 64.340 kb on + strand at 64.341 kb on - strand at 64.364 kb on + strand at 64.365 kb on - strand at 64.365 kb on - strand at 64.418 kb on + strand at 64.419 kb on - strand, within ABID97_RS00290 at 64.514 kb on + strand, within ABID97_RS00290 at 64.515 kb on - strand, within ABID97_RS00290 at 64.515 kb on - strand, within ABID97_RS00290 at 64.556 kb on + strand, within ABID97_RS00290 at 64.556 kb on + strand, within ABID97_RS00290 at 64.556 kb on + strand, within ABID97_RS00290 at 64.557 kb on - strand, within ABID97_RS00290 at 64.557 kb on - strand, within ABID97_RS00290 at 64.557 kb on - strand, within ABID97_RS00290 at 64.557 kb on - strand, within ABID97_RS00290 at 64.697 kb on + strand, within ABID97_RS00290 at 64.697 kb on + strand, within ABID97_RS00290 at 64.697 kb on + strand, within ABID97_RS00290 at 64.698 kb on - strand, within ABID97_RS00290 at 64.698 kb on - strand, within ABID97_RS00290 at 64.698 kb on - strand, within ABID97_RS00290 at 64.832 kb on + strand, within ABID97_RS00290 at 64.833 kb on - strand, within ABID97_RS00290 at 64.833 kb on - strand, within ABID97_RS00290 at 64.833 kb on - strand, within ABID97_RS00290 at 64.988 kb on + strand, within ABID97_RS00290 at 64.988 kb on + strand, within ABID97_RS00290 at 64.989 kb on - strand, within ABID97_RS00290 at 64.989 kb on - strand, within ABID97_RS00290 at 64.989 kb on - strand, within ABID97_RS00290 at 64.989 kb on - strand, within ABID97_RS00290 at 64.989 kb on - strand, within ABID97_RS00290 at 64.989 kb on - strand, within ABID97_RS00290 at 64.989 kb on - strand, within ABID97_RS00290 at 64.989 kb on - strand, within ABID97_RS00290 at 65.054 kb on + strand at 65.066 kb on + strand at 65.066 kb on + strand at 65.066 kb on + strand at 65.066 kb on + strand at 65.066 kb on + strand at 65.067 kb on - strand at 65.067 kb on - strand at 65.067 kb on - strand at 65.067 kb on - strand at 65.067 kb on - strand at 65.070 kb on + strand at 65.070 kb on + strand at 65.070 kb on + strand at 65.070 kb on + strand at 65.070 kb on + strand at 65.071 kb on - strand at 65.071 kb on - strand at 65.071 kb on - strand at 65.071 kb on - strand at 65.071 kb on - strand at 65.071 kb on - strand at 65.139 kb on + strand at 65.140 kb on - strand at 65.140 kb on - strand at 65.140 kb on - strand at 65.140 kb on - strand at 65.297 kb on - strand, within ABID97_RS00295 at 65.323 kb on + strand, within ABID97_RS00295 at 65.323 kb on + strand, within ABID97_RS00295 at 65.324 kb on - strand, within ABID97_RS00295 at 65.418 kb on - strand, within ABID97_RS00295 at 65.783 kb on + strand at 65.784 kb on - strand at 65.784 kb on - strand at 65.822 kb on + strand at 65.823 kb on - strand at 65.851 kb on + strand at 65.852 kb on - strand at 65.852 kb on - strand at 65.863 kb on + strand, within ABID97_RS00300 at 65.956 kb on + strand, within ABID97_RS00300 at 65.956 kb on + strand, within ABID97_RS00300 at 65.957 kb on - strand, within ABID97_RS00300 at 66.003 kb on - strand, within ABID97_RS00300 at 66.003 kb on - strand, within ABID97_RS00300 at 66.003 kb on - strand, within ABID97_RS00300 at 66.003 kb on - strand, within ABID97_RS00300 at 66.059 kb on + strand at 66.060 kb on - strand at 66.062 kb on + strand at 66.062 kb on + strand at 66.062 kb on + strand at 66.063 kb on - strand at 66.063 kb on - strand at 66.063 kb on - strand at 66.063 kb on - strand at 66.142 kb on + strand at 66.213 kb on - strand at 66.258 kb on + strand at 66.258 kb on + strand at 66.261 kb on + strand at 66.261 kb on + strand at 66.262 kb on - strand at 66.262 kb on - strand at 66.304 kb on + strand at 66.316 kb on - strand at 66.316 kb on - strand at 66.351 kb on + strand at 66.352 kb on - strand at 66.352 kb on - strand at 66.433 kb on - strand at 66.434 kb on + strand at 66.434 kb on + strand at 66.435 kb on - strand at 66.435 kb on - strand at 66.435 kb on - strand at 66.435 kb on - strand at 66.435 kb on - strand at 66.435 kb on - strand at 66.466 kb on - strand at 66.490 kb on + strand at 66.491 kb on - strand at 66.491 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Malic Acid (C) remove 64,287 - +0.3 64,287 - +1.4 64,287 - -0.0 64,340 + -0.0 64,340 + -0.2 64,341 - +0.6 64,364 + +0.2 64,365 - -0.0 64,365 - -1.1 64,418 + +0.0 64,419 - ABID97_RS00290 0.10 -0.3 64,514 + ABID97_RS00290 0.23 +2.9 64,515 - ABID97_RS00290 0.23 -0.6 64,515 - ABID97_RS00290 0.23 +0.2 64,556 + ABID97_RS00290 0.28 -0.0 64,556 + ABID97_RS00290 0.28 +0.2 64,556 + ABID97_RS00290 0.28 +0.6 64,557 - ABID97_RS00290 0.29 -0.4 64,557 - ABID97_RS00290 0.29 +0.3 64,557 - ABID97_RS00290 0.29 -0.2 64,557 - ABID97_RS00290 0.29 +0.2 64,697 + ABID97_RS00290 0.48 -0.1 64,697 + ABID97_RS00290 0.48 -1.9 64,697 + ABID97_RS00290 0.48 -1.2 64,698 - ABID97_RS00290 0.48 +0.3 64,698 - ABID97_RS00290 0.48 +0.2 64,698 - ABID97_RS00290 0.48 -0.9 64,832 + ABID97_RS00290 0.66 +0.5 64,833 - ABID97_RS00290 0.66 -1.9 64,833 - ABID97_RS00290 0.66 -0.3 64,833 - ABID97_RS00290 0.66 -0.2 64,988 + ABID97_RS00290 0.87 -0.5 64,988 + ABID97_RS00290 0.87 -0.4 64,989 - ABID97_RS00290 0.87 -0.4 64,989 - ABID97_RS00290 0.87 +0.0 64,989 - ABID97_RS00290 0.87 +0.3 64,989 - ABID97_RS00290 0.87 -0.3 64,989 - ABID97_RS00290 0.87 -0.3 64,989 - ABID97_RS00290 0.87 +0.2 64,989 - ABID97_RS00290 0.87 -0.2 64,989 - ABID97_RS00290 0.87 +0.1 65,054 + -0.6 65,066 + -0.1 65,066 + -0.3 65,066 + +0.2 65,066 + -0.3 65,066 + +0.6 65,067 - +1.0 65,067 - +0.6 65,067 - -0.6 65,067 - +0.2 65,067 - -0.3 65,070 + +0.4 65,070 + -0.4 65,070 + -0.4 65,070 + +0.6 65,070 + +2.9 65,071 - -0.2 65,071 - -0.3 65,071 - +0.4 65,071 - +0.1 65,071 - -0.4 65,071 - -0.6 65,139 + +0.2 65,140 - +0.4 65,140 - -0.4 65,140 - -0.3 65,140 - +0.0 65,297 - ABID97_RS00295 0.31 +0.3 65,323 + ABID97_RS00295 0.38 +0.4 65,323 + ABID97_RS00295 0.38 -0.3 65,324 - ABID97_RS00295 0.39 +0.2 65,418 - ABID97_RS00295 0.64 -0.2 65,783 + +0.6 65,784 - +0.9 65,784 - +1.2 65,822 + +1.3 65,823 - +0.5 65,851 + +0.3 65,852 - +0.1 65,852 - -1.0 65,863 + ABID97_RS00300 0.11 +0.6 65,956 + ABID97_RS00300 0.49 +1.6 65,956 + ABID97_RS00300 0.49 +0.1 65,957 - ABID97_RS00300 0.50 +0.9 66,003 - ABID97_RS00300 0.69 +2.6 66,003 - ABID97_RS00300 0.69 +0.7 66,003 - ABID97_RS00300 0.69 +0.6 66,003 - ABID97_RS00300 0.69 +0.2 66,059 + +0.2 66,060 - +0.6 66,062 + -0.1 66,062 + +1.3 66,062 + +0.8 66,063 - +0.7 66,063 - +0.6 66,063 - -0.5 66,063 - +0.2 66,142 + +1.2 66,213 - +0.0 66,258 + +0.4 66,258 + +0.0 66,261 + -0.1 66,261 + -0.1 66,262 - -0.1 66,262 - +0.7 66,304 + +0.2 66,316 - -0.5 66,316 - -0.2 66,351 + +1.4 66,352 - -0.6 66,352 - +0.3 66,433 - +0.1 66,434 + +0.4 66,434 + -0.0 66,435 - +1.3 66,435 - +0.1 66,435 - +1.0 66,435 - +0.4 66,435 - -0.1 66,435 - +0.1 66,466 - -0.5 66,490 + -0.0 66,491 - -0.1 66,491 - -0.2
Or see this region's nucleotide sequence