Experiment: D,L-Malic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS00175 and ABID97_RS00180 are separated by 18 nucleotides ABID97_RS00180 and ABID97_RS00185 are separated by 47 nucleotides ABID97_RS00185 and ABID97_RS00190 are separated by 25 nucleotides
ABID97_RS00175: ABID97_RS00175 - DUF805 domain-containing protein, at 42,429 to 42,971
_RS00175
ABID97_RS00180: ABID97_RS00180 - DUF805 domain-containing protein, at 42,990 to 43,544
_RS00180
ABID97_RS00185: ABID97_RS00185 - DUF58 domain-containing protein, at 43,592 to 44,953
_RS00185
ABID97_RS00190: ABID97_RS00190 - MoxR family ATPase, at 44,979 to 45,974
_RS00190
Position (kb) 43
44
45 Strain fitness (log2 ratio) -1
0
1 at 42.611 kb on - strand, within ABID97_RS00175 at 42.721 kb on + strand, within ABID97_RS00175 at 42.827 kb on - strand, within ABID97_RS00175 at 42.841 kb on + strand, within ABID97_RS00175 at 42.841 kb on + strand, within ABID97_RS00175 at 42.842 kb on - strand, within ABID97_RS00175 at 42.851 kb on - strand, within ABID97_RS00175 at 42.851 kb on - strand, within ABID97_RS00175 at 42.877 kb on + strand, within ABID97_RS00175 at 42.878 kb on - strand, within ABID97_RS00175 at 42.878 kb on - strand, within ABID97_RS00175 at 42.952 kb on + strand at 43.030 kb on + strand at 43.030 kb on + strand at 43.031 kb on - strand at 43.031 kb on - strand at 43.039 kb on + strand at 43.039 kb on + strand at 43.040 kb on - strand at 43.271 kb on - strand, within ABID97_RS00180 at 43.271 kb on - strand, within ABID97_RS00180 at 43.271 kb on - strand, within ABID97_RS00180 at 43.271 kb on - strand, within ABID97_RS00180 at 43.271 kb on - strand, within ABID97_RS00180 at 43.282 kb on + strand, within ABID97_RS00180 at 43.282 kb on + strand, within ABID97_RS00180 at 43.282 kb on + strand, within ABID97_RS00180 at 43.390 kb on + strand, within ABID97_RS00180 at 43.391 kb on - strand, within ABID97_RS00180 at 43.397 kb on - strand, within ABID97_RS00180 at 43.406 kb on - strand, within ABID97_RS00180 at 43.406 kb on - strand, within ABID97_RS00180 at 43.406 kb on - strand, within ABID97_RS00180 at 44.112 kb on + strand, within ABID97_RS00185 at 44.112 kb on + strand, within ABID97_RS00185 at 44.112 kb on + strand, within ABID97_RS00185 at 44.112 kb on + strand, within ABID97_RS00185 at 44.112 kb on + strand, within ABID97_RS00185 at 44.112 kb on + strand, within ABID97_RS00185 at 44.113 kb on - strand, within ABID97_RS00185 at 44.113 kb on - strand, within ABID97_RS00185 at 44.113 kb on - strand, within ABID97_RS00185 at 44.113 kb on - strand, within ABID97_RS00185 at 44.322 kb on + strand, within ABID97_RS00185 at 44.323 kb on - strand, within ABID97_RS00185 at 44.367 kb on + strand, within ABID97_RS00185 at 44.367 kb on + strand, within ABID97_RS00185 at 44.367 kb on + strand, within ABID97_RS00185 at 44.368 kb on - strand, within ABID97_RS00185 at 44.368 kb on - strand, within ABID97_RS00185 at 44.419 kb on - strand, within ABID97_RS00185 at 44.445 kb on + strand, within ABID97_RS00185 at 44.446 kb on - strand, within ABID97_RS00185 at 45.248 kb on - strand, within ABID97_RS00190 at 45.467 kb on - strand, within ABID97_RS00190 at 45.467 kb on - strand, within ABID97_RS00190 at 45.557 kb on - strand, within ABID97_RS00190 at 45.652 kb on + strand, within ABID97_RS00190 at 45.653 kb on - strand, within ABID97_RS00190
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Malic Acid (C) remove 42,611 - ABID97_RS00175 0.34 -0.1 42,721 + ABID97_RS00175 0.54 -0.4 42,827 - ABID97_RS00175 0.73 +0.1 42,841 + ABID97_RS00175 0.76 +0.1 42,841 + ABID97_RS00175 0.76 +0.4 42,842 - ABID97_RS00175 0.76 +1.0 42,851 - ABID97_RS00175 0.78 +0.0 42,851 - ABID97_RS00175 0.78 +0.3 42,877 + ABID97_RS00175 0.83 -0.2 42,878 - ABID97_RS00175 0.83 -0.6 42,878 - ABID97_RS00175 0.83 -0.4 42,952 + -0.2 43,030 + +0.0 43,030 + -0.1 43,031 - -0.3 43,031 - -0.1 43,039 + +1.7 43,039 + +0.3 43,040 - -0.1 43,271 - ABID97_RS00180 0.51 -0.1 43,271 - ABID97_RS00180 0.51 -0.6 43,271 - ABID97_RS00180 0.51 +0.3 43,271 - ABID97_RS00180 0.51 -0.1 43,271 - ABID97_RS00180 0.51 -0.1 43,282 + ABID97_RS00180 0.53 +0.5 43,282 + ABID97_RS00180 0.53 +0.2 43,282 + ABID97_RS00180 0.53 -0.1 43,390 + ABID97_RS00180 0.72 +0.1 43,391 - ABID97_RS00180 0.72 +0.0 43,397 - ABID97_RS00180 0.73 +1.0 43,406 - ABID97_RS00180 0.75 +0.3 43,406 - ABID97_RS00180 0.75 +1.6 43,406 - ABID97_RS00180 0.75 -0.2 44,112 + ABID97_RS00185 0.38 +0.0 44,112 + ABID97_RS00185 0.38 -1.7 44,112 + ABID97_RS00185 0.38 -0.2 44,112 + ABID97_RS00185 0.38 -0.0 44,112 + ABID97_RS00185 0.38 -0.6 44,112 + ABID97_RS00185 0.38 +1.6 44,113 - ABID97_RS00185 0.38 -1.0 44,113 - ABID97_RS00185 0.38 -0.3 44,113 - ABID97_RS00185 0.38 +0.3 44,113 - ABID97_RS00185 0.38 -0.2 44,322 + ABID97_RS00185 0.54 -0.0 44,323 - ABID97_RS00185 0.54 +0.3 44,367 + ABID97_RS00185 0.57 +0.2 44,367 + ABID97_RS00185 0.57 -0.4 44,367 + ABID97_RS00185 0.57 -0.1 44,368 - ABID97_RS00185 0.57 +0.2 44,368 - ABID97_RS00185 0.57 -1.0 44,419 - ABID97_RS00185 0.61 +0.2 44,445 + ABID97_RS00185 0.63 -0.3 44,446 - ABID97_RS00185 0.63 -0.7 45,248 - ABID97_RS00190 0.27 +0.2 45,467 - ABID97_RS00190 0.49 +0.3 45,467 - ABID97_RS00190 0.49 +0.2 45,557 - ABID97_RS00190 0.58 -1.0 45,652 + ABID97_RS00190 0.68 +0.9 45,653 - ABID97_RS00190 0.68 +1.0
Or see this region's nucleotide sequence