Strain Fitness in Pseudomonas sp. RS175 around PFR28_05110

Experiment: L-Phenylalanine carbon 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Phenylalanine carbon 5 mM
5,853,901	-				+1.7
5,854,017	-				-2.1
5,854,018	+				+1.3
5,854,018	+				-1.7
5,854,018	+				-1.6
5,854,018	+				-0.9
5,854,018	+				+0.8
5,854,018	+				+0.3
5,854,019	-				-0.1
5,854,019	-				+2.4
5,854,019	-				+0.4
5,854,019	-				-1.1
5,854,019	-				+0.5
5,854,072	+				-2.3
5,854,091	+				+1.4
5,854,091	+				-3.5
5,854,091	+				+1.2
5,854,091	+				+1.4
5,854,092	-				-0.7
5,854,092	-				-1.3
5,854,092	-				-1.8
5,854,092	-				+0.8
5,854,092	-				+1.7
5,854,092	-				+0.7
5,854,095	+				+0.8
5,854,095	+				+0.1
5,854,095	+				-1.1
5,854,095	+				-0.7
5,854,095	+				-1.9
5,854,095	+				-2.0
5,854,096	-				+0.9
5,854,096	-				-0.2
5,854,096	-				-0.6
5,854,096	-				+0.5
5,854,096	-				+0.7
5,854,096	-				+1.9
5,854,096	-				+0.8
5,854,096	-				-2.3
5,854,096	-				-0.3
5,854,099	+				-0.0
5,854,099	+				-1.6
5,854,099	+				-0.6
5,854,099	+				+0.2
5,854,099	+				-0.1
5,854,099	+				+0.5
5,854,100	-				-1.8
5,854,100	-				+0.8
5,854,100	-				+2.0
5,854,100	-				+2.0
5,854,106	+				-1.9
5,854,106	+				+1.2
5,854,106	+				+1.1
5,854,106	+				+0.3
5,854,106	+				+1.2
5,854,106	+				+1.0
5,854,107	-				+0.6
5,854,107	-				+0.1
5,854,107	-				-3.2
5,854,107	-				-0.4
5,854,107	-				-1.3
5,854,107	-				-1.7
5,854,110	+				+0.4
5,854,110	+				+1.0
5,854,110	+				-1.8
5,854,110	+				-0.3
5,854,110	+				-1.2
5,854,110	+				-1.3
5,854,110	+				+1.3
5,854,111	-				+1.1
5,854,111	-				+1.4
5,854,111	-				-2.4
5,854,111	-				-0.5
5,854,111	-				-0.7
5,854,111	-				+0.9
5,854,111	-				+0.6
5,854,111	-				+1.9
5,854,111	-				-2.6
5,854,133	+				+0.3
5,854,133	+				+1.2
5,854,134	-				+2.5
5,854,134	-				+1.0
5,854,134	-				-2.4
5,854,134	-				-1.7
5,854,162	+				-0.0
5,854,163	-				-0.1
5,854,264	+		PFR28_05110	0.18	+0.2
5,854,264	+		PFR28_05110	0.18	-1.1
5,854,264	+		PFR28_05110	0.18	+0.8
5,854,265	-		PFR28_05110	0.18	+2.0
5,854,265	-		PFR28_05110	0.18	-2.6
5,854,265	-		PFR28_05110	0.18	-1.2
5,854,265	-		PFR28_05110	0.18	-1.0
5,854,330	+		PFR28_05110	0.26	-1.6
5,854,330	+		PFR28_05110	0.26	+0.3
5,854,331	-		PFR28_05110	0.26	+0.2
5,854,331	-		PFR28_05110	0.26	-0.9
5,854,331	-		PFR28_05110	0.26	+0.9
5,854,331	-		PFR28_05110	0.26	-1.3
5,854,354	+		PFR28_05110	0.29	+0.5
5,854,354	+		PFR28_05110	0.29	-1.0
5,854,355	-		PFR28_05110	0.29	-0.7
5,854,444	+		PFR28_05110	0.39	-2.2
5,854,444	+		PFR28_05110	0.39	+0.8
5,854,445	-		PFR28_05110	0.39	+0.3
5,854,445	-		PFR28_05110	0.39	-1.9
5,854,445	-		PFR28_05110	0.39	-1.7
5,854,492	+		PFR28_05110	0.45	-0.1
5,854,492	+		PFR28_05110	0.45	+0.1
5,854,492	+		PFR28_05110	0.45	-1.7
5,854,492	+		PFR28_05110	0.45	+0.5
5,854,493	-		PFR28_05110	0.45	-0.6
5,854,493	-		PFR28_05110	0.45	-0.1
5,854,493	-		PFR28_05110	0.45	+1.9
5,854,493	-		PFR28_05110	0.45	-0.5
5,854,493	-		PFR28_05110	0.45	-2.5
5,854,561	+		PFR28_05110	0.53	-1.9
5,854,561	+		PFR28_05110	0.53	+1.0
5,854,561	+		PFR28_05110	0.53	-0.6
5,854,562	-		PFR28_05110	0.53	-0.8
5,854,620	+		PFR28_05110	0.60	+2.1
5,854,621	-		PFR28_05110	0.60	+0.7
5,854,822	+		PFR28_05110	0.83	+0.7
5,854,822	+		PFR28_05110	0.83	+0.9
5,854,823	-		PFR28_05110	0.84	+1.3
5,854,823	-		PFR28_05110	0.84	+1.3
5,854,961	-				+0.1
5,854,979	+				-2.0
5,854,979	+				+2.2
5,854,979	+				-0.6
5,854,979	+				+0.5
5,854,979	+				+0.3
5,854,979	+				-3.5
5,854,979	+				-0.7
5,854,979	+				-1.1
5,854,980	-				-1.8
5,854,980	-				+0.1
5,854,980	-				-1.3
5,854,980	-				+1.7
5,854,980	-				-0.2
5,854,980	-				-2.0
5,855,037	-				-2.2
5,855,067	+				-1.4
5,855,101	+				-0.0
5,855,101	+				-3.0
5,855,101	+				-0.1
5,855,101	+				-2.5
5,855,101	+				+0.3
5,855,101	+				+2.2
5,855,102	-				+0.1
5,855,102	-				-0.2
5,855,102	-				-2.4
5,855,102	-				-2.8
5,855,102	-				+0.1
5,855,121	+				-1.0
5,855,121	+				+0.2
5,855,121	+				-1.7
5,855,121	+				+0.5
5,855,121	+				-0.0
5,855,121	+				-0.7
5,855,122	-				+0.2
5,855,122	-				-0.2
5,855,122	-				+1.3
5,855,122	-				-2.3
5,855,135	+				-0.3
5,855,136	-				+1.5
5,855,152	+				+1.4
5,855,152	+				-0.2
5,855,152	+				+0.1
5,855,153	-				+0.6
5,855,302	-		PFR28_05111	0.17	-0.7
5,855,343	+		PFR28_05111	0.21	-2.4
5,855,343	+		PFR28_05111	0.21	-1.6
5,855,343	+		PFR28_05111	0.21	-1.5
5,855,343	+		PFR28_05111	0.21	-1.1
5,855,343	+		PFR28_05111	0.21	+0.5
5,855,344	-		PFR28_05111	0.21	-2.9
5,855,344	-		PFR28_05111	0.21	+0.3
5,855,344	-		PFR28_05111	0.21	+0.6
5,855,344	-		PFR28_05111	0.21	-1.8
5,855,344	-		PFR28_05111	0.21	-1.4
5,855,344	-		PFR28_05111	0.21	+0.5
5,855,344	-		PFR28_05111	0.21	-1.7
5,855,344	-		PFR28_05111	0.21	-0.4
5,855,344	-		PFR28_05111	0.21	+0.4
5,855,344	-		PFR28_05111	0.21	+3.3
5,855,344	-		PFR28_05111	0.21	+0.0
5,855,344	-		PFR28_05111	0.21	+1.7
5,855,344	-		PFR28_05111	0.21	-0.8
5,855,344	-		PFR28_05111	0.21	+1.1
5,855,655	+		PFR28_05111	0.51	-1.4
5,855,656	-		PFR28_05111	0.51	-0.1
5,855,656	-		PFR28_05111	0.51	+0.3
5,855,730	-		PFR28_05111	0.58	+2.1
5,855,746	-		PFR28_05111	0.59	-1.7
5,855,746	-		PFR28_05111	0.59	+0.8
5,855,746	-		PFR28_05111	0.59	-2.1
5,855,746	-		PFR28_05111	0.59	+1.7