Strain Fitness in Pseudomonas sp. RS175 around PFR28_04976

Experiment: L-Phenylalanine carbon 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Phenylalanine carbon 5 mM
5,675,411	+		PFR28_04975	0.20	-0.2
5,675,411	+		PFR28_04975	0.20	+0.3
5,675,411	+		PFR28_04975	0.20	-0.7
5,675,412	-		PFR28_04975	0.21	-1.0
5,675,459	+		PFR28_04975	0.26	+0.3
5,675,459	+		PFR28_04975	0.26	-0.4
5,675,459	+		PFR28_04975	0.26	-0.3
5,675,459	+		PFR28_04975	0.26	-0.7
5,675,460	-		PFR28_04975	0.26	-0.4
5,675,460	-		PFR28_04975	0.26	-0.8
5,675,460	-		PFR28_04975	0.26	+1.7
5,675,541	+		PFR28_04975	0.35	+0.4
5,675,726	-		PFR28_04975	0.55	-0.2
5,675,765	+		PFR28_04975	0.59	-1.2
5,675,766	-		PFR28_04975	0.59	-0.3
5,675,864	+		PFR28_04975	0.70	-1.3
5,675,865	-		PFR28_04975	0.70	-0.9
5,675,865	-		PFR28_04975	0.70	-0.2
5,675,865	-		PFR28_04975	0.70	-0.9
5,675,891	+		PFR28_04975	0.73	-2.3
5,676,029	+		PFR28_04975	0.88	-3.0
5,676,029	+		PFR28_04975	0.88	+1.6
5,676,029	+		PFR28_04975	0.88	-1.4
5,676,030	-		PFR28_04975	0.88	-3.2
5,676,030	-		PFR28_04975	0.88	-0.2
5,676,030	-		PFR28_04975	0.88	+1.5
5,676,030	-		PFR28_04975	0.88	-0.4
5,676,030	-		PFR28_04975	0.88	-1.1
5,676,030	-		PFR28_04975	0.88	-2.0
5,676,030	-		PFR28_04975	0.88	+0.5
5,676,030	-		PFR28_04975	0.88	+1.3
5,676,030	-		PFR28_04975	0.88	-0.3
5,676,030	-		PFR28_04975	0.88	-0.4
5,676,030	-		PFR28_04975	0.88	+0.2
5,676,030	-		PFR28_04975	0.88	-0.7
5,676,030	-		PFR28_04975	0.88	-0.3
5,676,030	-		PFR28_04975	0.88	-0.5
5,676,098	+				+0.9
5,676,116	+				+0.5
5,676,116	+				+1.2
5,676,116	+				+1.0
5,676,116	+				-2.7
5,676,116	+				+1.2
5,676,117	-				+1.4
5,676,117	-				-2.6
5,676,117	-				+0.9
5,676,117	-				-0.5
5,676,117	-				+0.3
5,676,157	+				+0.5
5,676,162	+				-0.7
5,676,163	-				-0.3
5,676,163	-				+1.4
5,676,163	-				-0.4
5,676,173	+				-0.7
5,676,173	+				-0.7
5,676,174	-				+0.2
5,676,193	+				-0.2
5,676,193	+				+1.3
5,676,193	+				-0.6
5,676,194	-				+1.1
5,676,194	-				+1.2
5,676,194	-				+0.9
5,676,194	-				-1.4
5,676,197	+				+0.2
5,676,197	+				-0.4
5,676,197	+				+0.2
5,676,197	+				+1.2
5,676,197	+				-1.5
5,676,197	+				-1.6
5,676,198	-				+1.4
5,676,198	-				+1.9
5,676,198	-				+0.8
5,676,198	-				-3.0
5,676,198	-				-0.6
5,676,198	-				-0.7
5,676,198	-				+1.0
5,676,198	-				+0.5
5,676,228	+				-1.3
5,676,253	+				+1.0
5,676,306	+				+1.9
5,676,306	+				-0.8
5,676,306	+				-3.0
5,676,306	+				+0.7
5,676,307	-				+0.6
5,676,313	+				+0.5
5,676,313	+				-2.8
5,676,313	+				-0.1
5,676,313	+				-1.5
5,676,314	-				-0.0
5,676,314	-				+0.4
5,676,314	-				+0.3
5,676,314	-				-0.0
5,676,403	+		PFR28_04976	0.17	+2.1
5,676,403	+		PFR28_04976	0.17	+0.6
5,676,404	-		PFR28_04976	0.17	+0.1
5,676,546	+		PFR28_04976	0.31	+0.3
5,676,547	-		PFR28_04976	0.31	+0.7
5,676,547	-		PFR28_04976	0.31	+0.1
5,676,596	-		PFR28_04976	0.37	+1.3
5,676,679	+		PFR28_04976	0.45	+1.4
5,676,680	-		PFR28_04976	0.45	+0.7
5,676,680	-		PFR28_04976	0.45	+0.3
5,676,680	-		PFR28_04976	0.45	+0.1
5,676,713	-		PFR28_04976	0.49	-0.7
5,676,724	+		PFR28_04976	0.50	-0.1
5,676,724	+		PFR28_04976	0.50	-0.9
5,676,724	+		PFR28_04976	0.50	+0.2
5,676,724	+		PFR28_04976	0.50	-3.1
5,676,724	+		PFR28_04976	0.50	-1.9
5,676,724	+		PFR28_04976	0.50	-0.3
5,676,724	+		PFR28_04976	0.50	-1.0
5,676,724	+		PFR28_04976	0.50	-1.5
5,676,725	-		PFR28_04976	0.50	-1.4
5,676,725	-		PFR28_04976	0.50	-1.1
5,676,725	-		PFR28_04976	0.50	+0.7
5,676,725	-		PFR28_04976	0.50	+0.3
5,676,725	-		PFR28_04976	0.50	+0.9
5,676,725	-		PFR28_04976	0.50	-3.7
5,676,778	-		PFR28_04976	0.55	+0.2
5,676,937	+		PFR28_04976	0.72	-0.4
5,676,937	+		PFR28_04976	0.72	-0.7
5,676,937	+		PFR28_04976	0.72	+0.8
5,676,937	+		PFR28_04976	0.72	+0.7
5,676,937	+		PFR28_04976	0.72	-0.3
5,676,938	-		PFR28_04976	0.72	+0.3
5,676,938	-		PFR28_04976	0.72	+0.3
5,676,938	-		PFR28_04976	0.72	-0.9
5,676,938	-		PFR28_04976	0.72	+1.8
5,676,938	-		PFR28_04976	0.72	-1.8
5,676,938	-		PFR28_04976	0.72	-0.4
5,676,938	-		PFR28_04976	0.72	-3.8
5,676,938	-		PFR28_04976	0.72	+0.7
5,676,938	-		PFR28_04976	0.72	+0.2
5,677,294	+		PFR28_04977	0.19	-0.1
5,677,295	-		PFR28_04977	0.20	+1.8
5,677,362	+		PFR28_04977	0.35	-2.7
5,677,530	+		PFR28_04977	0.73	-0.2
5,677,531	-		PFR28_04977	0.74	+0.6
5,677,531	-		PFR28_04977	0.74	-1.3
5,677,531	-		PFR28_04977	0.74	+0.7
5,677,578	-		PFR28_04977	0.84	+1.2
5,677,609	+				+0.2
5,677,610	-				+1.1
5,677,636	+				-3.2
5,677,637	-				-0.6
5,677,685	-				+0.2
5,677,685	-				-0.9
5,677,705	-				-1.1
5,677,708	+				-0.4
5,677,708	+				+2.0
5,677,709	-				-0.8
5,677,709	-				-1.2
5,677,709	-				-2.5
5,677,709	-				+1.9
5,677,709	-				+0.6
5,677,709	-				+0.0
5,677,745	+				-0.6
5,677,745	+				-1.6
5,677,745	+				-1.1
5,677,745	+				-0.1
5,677,746	-				+0.9
5,677,746	-				+0.1
5,677,746	-				+1.2
5,677,749	+				-2.5
5,677,749	+				-1.9
5,677,749	+				-1.3
5,677,750	-				-0.3
5,677,795	+				+1.6
5,677,795	+				-2.0
5,677,795	+				-1.3
5,677,796	-				+1.2
5,677,918	+				+0.9
5,677,919	-				-1.7
5,677,924	-				+0.6
5,677,924	-				+1.9
5,677,976	+				+2.2
5,677,976	+				-0.7
5,677,976	+				-0.7
5,677,976	+				-0.1
5,677,977	-				+1.6
5,677,977	-				+0.0
5,677,977	-				+2.1
5,677,985	+				-0.4
5,677,985	+				+2.2
5,677,986	-				-0.5
5,677,986	-				+0.0
5,677,986	-				+1.7
5,678,015	+				+0.3
5,678,016	-				-0.9
5,678,187	+		PFR28_04978	0.12	+0.7
5,678,187	+		PFR28_04978	0.12	-0.1