Strain Fitness in Serratia liquefaciens MT49 around IAI46_24715

Experiment: Nickel (II) chloride 80 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_24710 and IAI46_24715 are separated by 9 nucleotidesIAI46_24715 and IAI46_24720 are separated by 2 nucleotides IAI46_24710: IAI46_24710 - 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, at 5,273,317 to 5,274,861 _24710 IAI46_24715: IAI46_24715 - murein hydrolase activator EnvC, at 5,274,871 to 5,276,205 _24715 IAI46_24720: IAI46_24720 - divergent polysaccharide deacetylase family protein, at 5,276,208 to 5,277,173 _24720 Position (kb) 5274 5275 5276 5277Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5273.878 kb on + strand, within IAI46_24710at 5273.878 kb on + strand, within IAI46_24710at 5273.881 kb on + strand, within IAI46_24710at 5273.881 kb on + strand, within IAI46_24710at 5273.881 kb on + strand, within IAI46_24710at 5273.881 kb on + strand, within IAI46_24710at 5273.882 kb on - strand, within IAI46_24710at 5273.882 kb on - strand, within IAI46_24710at 5273.882 kb on - strand, within IAI46_24710at 5273.887 kb on - strand, within IAI46_24710at 5273.927 kb on - strand, within IAI46_24710at 5273.933 kb on + strand, within IAI46_24710at 5273.933 kb on + strand, within IAI46_24710at 5274.141 kb on - strand, within IAI46_24710at 5274.211 kb on + strand, within IAI46_24710at 5274.349 kb on + strand, within IAI46_24710at 5274.349 kb on + strand, within IAI46_24710at 5274.349 kb on + strand, within IAI46_24710at 5274.349 kb on + strand, within IAI46_24710at 5274.350 kb on - strand, within IAI46_24710at 5274.350 kb on - strand, within IAI46_24710at 5274.350 kb on - strand, within IAI46_24710at 5274.350 kb on - strand, within IAI46_24710at 5274.421 kb on + strand, within IAI46_24710at 5274.480 kb on + strand, within IAI46_24710at 5274.493 kb on + strand, within IAI46_24710at 5274.494 kb on - strand, within IAI46_24710at 5274.515 kb on - strand, within IAI46_24710at 5274.528 kb on + strand, within IAI46_24710at 5274.529 kb on - strand, within IAI46_24710at 5274.733 kb on + strandat 5274.734 kb on - strandat 5274.837 kb on + strandat 5274.837 kb on + strandat 5274.870 kb on + strandat 5274.871 kb on - strandat 5274.897 kb on - strandat 5274.897 kb on - strandat 5274.965 kb on + strandat 5274.966 kb on - strandat 5274.987 kb on - strandat 5275.042 kb on - strand, within IAI46_24715at 5275.042 kb on - strand, within IAI46_24715at 5275.138 kb on - strand, within IAI46_24715at 5275.218 kb on + strand, within IAI46_24715at 5275.218 kb on + strand, within IAI46_24715at 5275.219 kb on + strand, within IAI46_24715at 5275.219 kb on - strand, within IAI46_24715at 5275.219 kb on - strand, within IAI46_24715at 5275.366 kb on - strand, within IAI46_24715at 5275.374 kb on + strand, within IAI46_24715at 5275.375 kb on - strand, within IAI46_24715at 5275.384 kb on + strand, within IAI46_24715at 5275.506 kb on - strand, within IAI46_24715at 5275.506 kb on - strand, within IAI46_24715at 5275.557 kb on + strand, within IAI46_24715at 5275.764 kb on + strand, within IAI46_24715at 5275.765 kb on - strand, within IAI46_24715at 5275.768 kb on + strand, within IAI46_24715at 5275.768 kb on + strand, within IAI46_24715at 5275.768 kb on + strand, within IAI46_24715at 5275.768 kb on + strand, within IAI46_24715at 5275.768 kb on + strand, within IAI46_24715at 5275.769 kb on - strand, within IAI46_24715at 5275.769 kb on - strand, within IAI46_24715at 5275.769 kb on - strand, within IAI46_24715at 5275.769 kb on - strand, within IAI46_24715at 5275.771 kb on - strand, within IAI46_24715at 5275.771 kb on - strand, within IAI46_24715at 5275.841 kb on + strand, within IAI46_24715at 5275.841 kb on + strand, within IAI46_24715at 5275.898 kb on + strand, within IAI46_24715at 5275.899 kb on - strand, within IAI46_24715at 5275.899 kb on - strand, within IAI46_24715at 5275.899 kb on - strand, within IAI46_24715at 5275.899 kb on - strand, within IAI46_24715at 5275.950 kb on + strand, within IAI46_24715at 5275.950 kb on + strand, within IAI46_24715at 5275.951 kb on - strand, within IAI46_24715at 5275.993 kb on + strand, within IAI46_24715at 5276.112 kb on - strandat 5276.186 kb on + strandat 5276.215 kb on - strandat 5276.217 kb on - strandat 5276.431 kb on + strand, within IAI46_24720at 5276.432 kb on - strand, within IAI46_24720at 5276.432 kb on - strand, within IAI46_24720at 5276.441 kb on + strand, within IAI46_24720at 5276.441 kb on + strand, within IAI46_24720at 5276.442 kb on - strand, within IAI46_24720at 5276.462 kb on + strand, within IAI46_24720at 5276.462 kb on + strand, within IAI46_24720at 5276.463 kb on - strand, within IAI46_24720at 5276.488 kb on + strand, within IAI46_24720at 5276.488 kb on + strand, within IAI46_24720at 5276.543 kb on + strand, within IAI46_24720at 5276.543 kb on + strand, within IAI46_24720at 5276.543 kb on + strand, within IAI46_24720at 5276.544 kb on - strand, within IAI46_24720at 5276.544 kb on - strand, within IAI46_24720at 5276.548 kb on + strand, within IAI46_24720at 5276.548 kb on + strand, within IAI46_24720at 5276.548 kb on + strand, within IAI46_24720at 5276.548 kb on + strand, within IAI46_24720at 5276.548 kb on + strand, within IAI46_24720at 5276.549 kb on - strand, within IAI46_24720at 5276.553 kb on + strand, within IAI46_24720at 5276.554 kb on - strand, within IAI46_24720at 5276.560 kb on + strand, within IAI46_24720at 5276.560 kb on + strand, within IAI46_24720at 5276.561 kb on - strand, within IAI46_24720at 5276.561 kb on - strand, within IAI46_24720at 5276.561 kb on - strand, within IAI46_24720at 5276.564 kb on + strand, within IAI46_24720at 5276.564 kb on + strand, within IAI46_24720at 5276.564 kb on + strand, within IAI46_24720at 5276.565 kb on - strand, within IAI46_24720at 5276.565 kb on - strand, within IAI46_24720at 5276.565 kb on - strand, within IAI46_24720at 5276.565 kb on - strand, within IAI46_24720at 5276.641 kb on - strand, within IAI46_24720at 5276.649 kb on + strand, within IAI46_24720at 5276.649 kb on + strand, within IAI46_24720at 5276.649 kb on + strand, within IAI46_24720at 5276.650 kb on - strand, within IAI46_24720at 5276.729 kb on + strand, within IAI46_24720at 5276.729 kb on + strand, within IAI46_24720at 5276.729 kb on + strand, within IAI46_24720at 5276.729 kb on + strand, within IAI46_24720at 5276.729 kb on + strand, within IAI46_24720at 5276.729 kb on + strand, within IAI46_24720at 5276.730 kb on - strand, within IAI46_24720at 5276.730 kb on - strand, within IAI46_24720at 5276.730 kb on - strand, within IAI46_24720at 5276.730 kb on - strand, within IAI46_24720at 5276.748 kb on - strand, within IAI46_24720at 5276.820 kb on - strand, within IAI46_24720at 5276.876 kb on + strand, within IAI46_24720at 5276.955 kb on + strand, within IAI46_24720at 5276.955 kb on + strand, within IAI46_24720at 5276.955 kb on + strand, within IAI46_24720at 5276.955 kb on + strand, within IAI46_24720at 5276.956 kb on - strand, within IAI46_24720at 5276.956 kb on - strand, within IAI46_24720at 5277.026 kb on + strand, within IAI46_24720at 5277.026 kb on + strand, within IAI46_24720at 5277.026 kb on + strand, within IAI46_24720at 5277.026 kb on + strand, within IAI46_24720at 5277.027 kb on - strand, within IAI46_24720at 5277.027 kb on - strand, within IAI46_24720at 5277.027 kb on - strand, within IAI46_24720at 5277.027 kb on - strand, within IAI46_24720at 5277.027 kb on - strand, within IAI46_24720at 5277.027 kb on - strand, within IAI46_24720at 5277.119 kb on + strandat 5277.119 kb on + strandat 5277.120 kb on - strandat 5277.165 kb on - strandat 5277.171 kb on + strandat 5277.171 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, anaerobic
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5,273,878 + IAI46_24710 0.36 -2.3
5,273,878 + IAI46_24710 0.36 +0.2
5,273,881 + IAI46_24710 0.37 +0.3
5,273,881 + IAI46_24710 0.37 +1.2
5,273,881 + IAI46_24710 0.37 -0.5
5,273,881 + IAI46_24710 0.37 -0.3
5,273,882 - IAI46_24710 0.37 +0.4
5,273,882 - IAI46_24710 0.37 +0.5
5,273,882 - IAI46_24710 0.37 +0.7
5,273,887 - IAI46_24710 0.37 -0.2
5,273,927 - IAI46_24710 0.39 +0.2
5,273,933 + IAI46_24710 0.40 +0.0
5,273,933 + IAI46_24710 0.40 -0.2
5,274,141 - IAI46_24710 0.53 +0.3
5,274,211 + IAI46_24710 0.58 -0.4
5,274,349 + IAI46_24710 0.67 -0.1
5,274,349 + IAI46_24710 0.67 +1.5
5,274,349 + IAI46_24710 0.67 +0.5
5,274,349 + IAI46_24710 0.67 +0.4
5,274,350 - IAI46_24710 0.67 +0.5
5,274,350 - IAI46_24710 0.67 +0.3
5,274,350 - IAI46_24710 0.67 +0.0
5,274,350 - IAI46_24710 0.67 +0.1
5,274,421 + IAI46_24710 0.71 +1.5
5,274,480 + IAI46_24710 0.75 -1.4
5,274,493 + IAI46_24710 0.76 +0.4
5,274,494 - IAI46_24710 0.76 +0.2
5,274,515 - IAI46_24710 0.78 +0.7
5,274,528 + IAI46_24710 0.78 -0.5
5,274,529 - IAI46_24710 0.78 +0.2
5,274,733 + -0.3
5,274,734 - +1.2
5,274,837 + +1.1
5,274,837 + -0.5
5,274,870 + +0.4
5,274,871 - -1.0
5,274,897 - +0.4
5,274,897 - +0.9
5,274,965 + -0.4
5,274,966 - -0.2
5,274,987 - -0.2
5,275,042 - IAI46_24715 0.13 -0.0
5,275,042 - IAI46_24715 0.13 -0.5
5,275,138 - IAI46_24715 0.20 +1.3
5,275,218 + IAI46_24715 0.26 +0.1
5,275,218 + IAI46_24715 0.26 +0.4
5,275,219 + IAI46_24715 0.26 -1.8
5,275,219 - IAI46_24715 0.26 -0.2
5,275,219 - IAI46_24715 0.26 +0.2
5,275,366 - IAI46_24715 0.37 -0.7
5,275,374 + IAI46_24715 0.38 +2.5
5,275,375 - IAI46_24715 0.38 +0.5
5,275,384 + IAI46_24715 0.38 -1.5
5,275,506 - IAI46_24715 0.48 +0.1
5,275,506 - IAI46_24715 0.48 -0.2
5,275,557 + IAI46_24715 0.51 +0.1
5,275,764 + IAI46_24715 0.67 -0.8
5,275,765 - IAI46_24715 0.67 -0.2
5,275,768 + IAI46_24715 0.67 -0.3
5,275,768 + IAI46_24715 0.67 -0.1
5,275,768 + IAI46_24715 0.67 +1.4
5,275,768 + IAI46_24715 0.67 +0.4
5,275,768 + IAI46_24715 0.67 +0.9
5,275,769 - IAI46_24715 0.67 +2.8
5,275,769 - IAI46_24715 0.67 +0.7
5,275,769 - IAI46_24715 0.67 -0.7
5,275,769 - IAI46_24715 0.67 +0.2
5,275,771 - IAI46_24715 0.67 -0.5
5,275,771 - IAI46_24715 0.67 -0.4
5,275,841 + IAI46_24715 0.73 +0.7
5,275,841 + IAI46_24715 0.73 -0.9
5,275,898 + IAI46_24715 0.77 -0.2
5,275,899 - IAI46_24715 0.77 +0.1
5,275,899 - IAI46_24715 0.77 -1.2
5,275,899 - IAI46_24715 0.77 -0.8
5,275,899 - IAI46_24715 0.77 +0.4
5,275,950 + IAI46_24715 0.81 +0.1
5,275,950 + IAI46_24715 0.81 +0.2
5,275,951 - IAI46_24715 0.81 +0.3
5,275,993 + IAI46_24715 0.84 +0.5
5,276,112 - -0.6
5,276,186 + +0.3
5,276,215 - +0.2
5,276,217 - +0.8
5,276,431 + IAI46_24720 0.23 +0.5
5,276,432 - IAI46_24720 0.23 +0.4
5,276,432 - IAI46_24720 0.23 -0.3
5,276,441 + IAI46_24720 0.24 +0.2
5,276,441 + IAI46_24720 0.24 +0.1
5,276,442 - IAI46_24720 0.24 +0.0
5,276,462 + IAI46_24720 0.26 +0.9
5,276,462 + IAI46_24720 0.26 -0.1
5,276,463 - IAI46_24720 0.26 -0.1
5,276,488 + IAI46_24720 0.29 +0.5
5,276,488 + IAI46_24720 0.29 +0.3
5,276,543 + IAI46_24720 0.35 -1.1
5,276,543 + IAI46_24720 0.35 -0.8
5,276,543 + IAI46_24720 0.35 -0.1
5,276,544 - IAI46_24720 0.35 +0.1
5,276,544 - IAI46_24720 0.35 -0.1
5,276,548 + IAI46_24720 0.35 +0.0
5,276,548 + IAI46_24720 0.35 +0.0
5,276,548 + IAI46_24720 0.35 +0.0
5,276,548 + IAI46_24720 0.35 -0.1
5,276,548 + IAI46_24720 0.35 -1.4
5,276,549 - IAI46_24720 0.35 -0.3
5,276,553 + IAI46_24720 0.36 -0.3
5,276,554 - IAI46_24720 0.36 +0.7
5,276,560 + IAI46_24720 0.36 -0.7
5,276,560 + IAI46_24720 0.36 -0.3
5,276,561 - IAI46_24720 0.37 +0.4
5,276,561 - IAI46_24720 0.37 -0.4
5,276,561 - IAI46_24720 0.37 -0.5
5,276,564 + IAI46_24720 0.37 +0.6
5,276,564 + IAI46_24720 0.37 +0.5
5,276,564 + IAI46_24720 0.37 +0.2
5,276,565 - IAI46_24720 0.37 -1.3
5,276,565 - IAI46_24720 0.37 -0.4
5,276,565 - IAI46_24720 0.37 +0.7
5,276,565 - IAI46_24720 0.37 -0.5
5,276,641 - IAI46_24720 0.45 +0.2
5,276,649 + IAI46_24720 0.46 -0.4
5,276,649 + IAI46_24720 0.46 -1.1
5,276,649 + IAI46_24720 0.46 +0.3
5,276,650 - IAI46_24720 0.46 -1.6
5,276,729 + IAI46_24720 0.54 +0.7
5,276,729 + IAI46_24720 0.54 +1.8
5,276,729 + IAI46_24720 0.54 -0.5
5,276,729 + IAI46_24720 0.54 -0.9
5,276,729 + IAI46_24720 0.54 -0.7
5,276,729 + IAI46_24720 0.54 -0.3
5,276,730 - IAI46_24720 0.54 +0.1
5,276,730 - IAI46_24720 0.54 -0.2
5,276,730 - IAI46_24720 0.54 +0.0
5,276,730 - IAI46_24720 0.54 +0.7
5,276,748 - IAI46_24720 0.56 -0.1
5,276,820 - IAI46_24720 0.63 +0.8
5,276,876 + IAI46_24720 0.69 -0.4
5,276,955 + IAI46_24720 0.77 +0.1
5,276,955 + IAI46_24720 0.77 -0.9
5,276,955 + IAI46_24720 0.77 -0.8
5,276,955 + IAI46_24720 0.77 -0.1
5,276,956 - IAI46_24720 0.77 -0.2
5,276,956 - IAI46_24720 0.77 -0.3
5,277,026 + IAI46_24720 0.85 -0.1
5,277,026 + IAI46_24720 0.85 +0.4
5,277,026 + IAI46_24720 0.85 +0.4
5,277,026 + IAI46_24720 0.85 +0.4
5,277,027 - IAI46_24720 0.85 +0.9
5,277,027 - IAI46_24720 0.85 -0.4
5,277,027 - IAI46_24720 0.85 -0.8
5,277,027 - IAI46_24720 0.85 -0.8
5,277,027 - IAI46_24720 0.85 +1.0
5,277,027 - IAI46_24720 0.85 -0.1
5,277,119 + +1.5
5,277,119 + +0.3
5,277,120 - -0.1
5,277,165 - -0.3
5,277,171 + +0.2
5,277,171 + -1.2

Or see this region's nucleotide sequence