Experiment: Nickel (II) chloride 80 uM, anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_14805 and IAI46_14810 are separated by 575 nucleotides IAI46_14810 and IAI46_14815 are separated by 55 nucleotides IAI46_14815 and IAI46_14820 are separated by 15 nucleotides
IAI46_14805: IAI46_14805 - TerC family protein, at 3,136,015 to 3,137,559
_14805
IAI46_14810: IAI46_14810 - PTS mannose transporter subunit IIAB, at 3,138,135 to 3,139,106
_14810
IAI46_14815: IAI46_14815 - PTS mannose/fructose/sorbose transporter subunit IIC, at 3,139,162 to 3,139,962
_14815
IAI46_14820: IAI46_14820 - PTS mannose transporter subunit IID, at 3,139,978 to 3,140,820
_14820
Position (kb)
3138
3139
3140 Strain fitness (log2 ratio)
-2
-1
0
1 at 3137.391 kb on + strand, within IAI46_14805 at 3137.522 kb on - strand at 3137.660 kb on + strand at 3137.661 kb on - strand at 3137.661 kb on - strand at 3137.663 kb on + strand at 3137.782 kb on - strand at 3137.805 kb on - strand at 3138.043 kb on + strand at 3138.044 kb on - strand at 3138.049 kb on - strand at 3138.089 kb on - strand at 3138.129 kb on + strand at 3138.142 kb on + strand at 3138.142 kb on + strand at 3138.146 kb on + strand at 3138.146 kb on + strand at 3138.147 kb on - strand at 3138.147 kb on - strand at 3138.149 kb on + strand at 3138.205 kb on + strand at 3138.205 kb on + strand at 3138.205 kb on + strand at 3138.205 kb on + strand at 3138.238 kb on - strand, within IAI46_14810 at 3138.280 kb on - strand, within IAI46_14810 at 3138.438 kb on + strand, within IAI46_14810 at 3138.546 kb on - strand, within IAI46_14810 at 3138.930 kb on - strand, within IAI46_14810 at 3139.120 kb on + strand at 3139.124 kb on + strand at 3139.187 kb on + strand at 3139.194 kb on - strand at 3139.194 kb on - strand at 3139.197 kb on + strand at 3139.270 kb on - strand, within IAI46_14815 at 3139.270 kb on - strand, within IAI46_14815 at 3139.284 kb on + strand, within IAI46_14815 at 3139.398 kb on + strand, within IAI46_14815 at 3139.611 kb on + strand, within IAI46_14815 at 3139.612 kb on - strand, within IAI46_14815 at 3139.639 kb on - strand, within IAI46_14815 at 3139.873 kb on + strand, within IAI46_14815 at 3139.873 kb on + strand, within IAI46_14815 at 3139.966 kb on + strand at 3139.966 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, anaerobic remove 3,137,391 + IAI46_14805 0.89 +0.8 3,137,522 - -0.3 3,137,660 + -1.0 3,137,661 - +0.2 3,137,661 - +0.4 3,137,663 + +1.0 3,137,782 - -1.2 3,137,805 - -0.3 3,138,043 + -0.3 3,138,044 - +0.3 3,138,049 - +1.2 3,138,089 - +0.6 3,138,129 + +0.4 3,138,142 + +0.7 3,138,142 + -1.6 3,138,146 + -0.2 3,138,146 + +0.6 3,138,147 - -2.1 3,138,147 - +0.8 3,138,149 + -0.6 3,138,205 + +0.1 3,138,205 + -0.8 3,138,205 + +0.2 3,138,205 + +0.8 3,138,238 - IAI46_14810 0.11 -1.4 3,138,280 - IAI46_14810 0.15 +1.0 3,138,438 + IAI46_14810 0.31 +0.6 3,138,546 - IAI46_14810 0.42 -0.4 3,138,930 - IAI46_14810 0.82 -1.8 3,139,120 + -1.8 3,139,124 + +0.3 3,139,187 + -1.0 3,139,194 - -0.7 3,139,194 - +0.1 3,139,197 + +0.7 3,139,270 - IAI46_14815 0.13 +0.5 3,139,270 - IAI46_14815 0.13 -0.4 3,139,284 + IAI46_14815 0.15 +0.4 3,139,398 + IAI46_14815 0.29 +0.6 3,139,611 + IAI46_14815 0.56 -0.2 3,139,612 - IAI46_14815 0.56 +0.3 3,139,639 - IAI46_14815 0.60 +0.6 3,139,873 + IAI46_14815 0.89 -0.3 3,139,873 + IAI46_14815 0.89 +0.1 3,139,966 + +0.5 3,139,966 + -0.0
Or see this region's nucleotide sequence