Strain Fitness in Serratia liquefaciens MT49 around IAI46_14570

Experiment: Nickel (II) chloride 80 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_14560 and IAI46_14565 overlap by 14 nucleotidesIAI46_14565 and IAI46_14570 are separated by 565 nucleotidesIAI46_14570 and IAI46_14575 are separated by 154 nucleotides IAI46_14560: IAI46_14560 - multidrug/spermidine efflux SMR transporter subunit MdtI, at 3,086,841 to 3,087,170 _14560 IAI46_14565: IAI46_14565 - multidrug/spermidine efflux SMR transporter subunit MdtJ, at 3,087,157 to 3,087,525 _14565 IAI46_14570: IAI46_14570 - bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase, at 3,088,091 to 3,088,732 _14570 IAI46_14575: IAI46_14575 - glucose-6-phosphate dehydrogenase, at 3,088,887 to 3,090,362 _14575 Position (kb) 3088 3089Strain fitness (log2 ratio) -1 0 1at 3087.151 kb on + strandat 3087.316 kb on - strand, within IAI46_14565at 3087.373 kb on - strand, within IAI46_14565at 3087.395 kb on + strand, within IAI46_14565at 3087.395 kb on + strand, within IAI46_14565at 3087.396 kb on - strand, within IAI46_14565at 3087.396 kb on - strand, within IAI46_14565at 3087.416 kb on + strand, within IAI46_14565at 3087.417 kb on - strand, within IAI46_14565at 3087.417 kb on - strand, within IAI46_14565at 3087.426 kb on + strand, within IAI46_14565at 3087.519 kb on - strandat 3087.549 kb on - strandat 3087.558 kb on + strandat 3087.730 kb on - strandat 3087.730 kb on - strandat 3087.730 kb on - strandat 3087.825 kb on - strandat 3087.829 kb on - strandat 3087.836 kb on - strandat 3087.860 kb on + strandat 3087.861 kb on - strandat 3088.117 kb on + strandat 3088.228 kb on - strand, within IAI46_14570at 3088.387 kb on + strand, within IAI46_14570at 3088.388 kb on - strand, within IAI46_14570at 3088.817 kb on - strandat 3088.869 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, anaerobic
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3,087,151 + +0.5
3,087,316 - IAI46_14565 0.43 -0.1
3,087,373 - IAI46_14565 0.59 -0.1
3,087,395 + IAI46_14565 0.64 -0.3
3,087,395 + IAI46_14565 0.64 -0.1
3,087,396 - IAI46_14565 0.65 +0.3
3,087,396 - IAI46_14565 0.65 +0.3
3,087,416 + IAI46_14565 0.70 +0.6
3,087,417 - IAI46_14565 0.70 +0.5
3,087,417 - IAI46_14565 0.70 +0.1
3,087,426 + IAI46_14565 0.73 +0.3
3,087,519 - +0.8
3,087,549 - +0.3
3,087,558 + -0.7
3,087,730 - +0.9
3,087,730 - +1.1
3,087,730 - -0.9
3,087,825 - +0.6
3,087,829 - +0.2
3,087,836 - -0.2
3,087,860 + +0.1
3,087,861 - +0.3
3,088,117 + +0.3
3,088,228 - IAI46_14570 0.21 -0.7
3,088,387 + IAI46_14570 0.46 -0.8
3,088,388 - IAI46_14570 0.46 -0.3
3,088,817 - +1.2
3,088,869 - -0.5

Or see this region's nucleotide sequence