Strain Fitness in Serratia liquefaciens MT49 around IAI46_11755

Experiment: Nickel (II) chloride 80 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_11750 and IAI46_11755 overlap by 1 nucleotidesIAI46_11755 and IAI46_11760 are separated by 20 nucleotidesIAI46_11760 and IAI46_11765 overlap by 11 nucleotides IAI46_11750: IAI46_11750 - sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC, at 2,479,660 to 2,480,739 _11750 IAI46_11755: IAI46_11755 - carbohydrate kinase family protein, at 2,480,739 to 2,481,692 _11755 IAI46_11760: IAI46_11760 - carbohydrate ABC transporter permease, at 2,481,713 to 2,482,552 _11760 IAI46_11765: IAI46_11765 - sugar ABC transporter permease, at 2,482,542 to 2,483,450 _11765 Position (kb) 2480 2481 2482Strain fitness (log2 ratio) -1 0 1at 2479.774 kb on + strand, within IAI46_11750at 2480.174 kb on + strand, within IAI46_11750at 2480.175 kb on - strand, within IAI46_11750at 2480.175 kb on - strand, within IAI46_11750at 2480.278 kb on + strand, within IAI46_11750at 2480.290 kb on - strand, within IAI46_11750at 2480.351 kb on + strand, within IAI46_11750at 2480.480 kb on + strand, within IAI46_11750at 2480.481 kb on - strand, within IAI46_11750at 2480.481 kb on - strand, within IAI46_11750at 2480.829 kb on - strandat 2481.344 kb on + strand, within IAI46_11755at 2481.345 kb on - strand, within IAI46_11755at 2481.478 kb on + strand, within IAI46_11755at 2481.479 kb on - strand, within IAI46_11755at 2481.661 kb on + strandat 2481.662 kb on - strandat 2481.697 kb on - strandat 2481.709 kb on + strandat 2482.130 kb on - strand, within IAI46_11760at 2482.168 kb on - strand, within IAI46_11760at 2482.203 kb on + strand, within IAI46_11760at 2482.203 kb on + strand, within IAI46_11760at 2482.204 kb on - strand, within IAI46_11760at 2482.204 kb on - strand, within IAI46_11760at 2482.387 kb on - strand, within IAI46_11760at 2482.595 kb on - strandat 2482.667 kb on - strand, within IAI46_11765

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, anaerobic
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2,479,774 + IAI46_11750 0.11 +0.3
2,480,174 + IAI46_11750 0.48 -0.6
2,480,175 - IAI46_11750 0.48 -0.7
2,480,175 - IAI46_11750 0.48 +0.9
2,480,278 + IAI46_11750 0.57 -1.1
2,480,290 - IAI46_11750 0.58 +0.1
2,480,351 + IAI46_11750 0.64 +0.7
2,480,480 + IAI46_11750 0.76 +0.3
2,480,481 - IAI46_11750 0.76 +0.6
2,480,481 - IAI46_11750 0.76 -1.3
2,480,829 - -1.2
2,481,344 + IAI46_11755 0.63 +0.1
2,481,345 - IAI46_11755 0.64 -0.4
2,481,478 + IAI46_11755 0.77 -0.3
2,481,479 - IAI46_11755 0.78 +0.6
2,481,661 + -0.0
2,481,662 - +0.4
2,481,697 - +0.1
2,481,709 + +0.3
2,482,130 - IAI46_11760 0.50 +0.3
2,482,168 - IAI46_11760 0.54 -1.3
2,482,203 + IAI46_11760 0.58 +1.0
2,482,203 + IAI46_11760 0.58 -0.7
2,482,204 - IAI46_11760 0.58 +0.4
2,482,204 - IAI46_11760 0.58 +0.1
2,482,387 - IAI46_11760 0.80 +1.3
2,482,595 - +0.2
2,482,667 - IAI46_11765 0.14 -0.0

Or see this region's nucleotide sequence