Strain Fitness in Serratia liquefaciens MT49 around IAI46_09780

Experiment: Nickel (II) chloride 80 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_09775 and IAI46_09780 are separated by 6 nucleotidesIAI46_09780 and IAI46_09785 are separated by 16 nucleotidesIAI46_09785 and IAI46_09790 are separated by 11 nucleotides IAI46_09775: IAI46_09775 - phosphate acyltransferase PlsX, at 2,070,762 to 2,071,796 _09775 IAI46_09780: IAI46_09780 - ketoacyl-ACP synthase III, at 2,071,803 to 2,072,756 _09780 IAI46_09785: IAI46_09785 - ACP S-malonyltransferase, at 2,072,773 to 2,073,702 _09785 IAI46_09790: IAI46_09790 - 3-oxoacyl-ACP reductase FabG, at 2,073,714 to 2,074,448 _09790 Position (kb) 2071 2072 2073Strain fitness (log2 ratio) -2 -1 0 1 2at 2070.851 kb on + strandat 2070.904 kb on + strand, within IAI46_09775at 2070.904 kb on + strand, within IAI46_09775at 2070.905 kb on - strand, within IAI46_09775at 2071.080 kb on - strand, within IAI46_09775at 2071.182 kb on - strand, within IAI46_09775at 2071.343 kb on + strand, within IAI46_09775at 2071.343 kb on + strand, within IAI46_09775at 2071.392 kb on + strand, within IAI46_09775at 2071.393 kb on - strand, within IAI46_09775at 2071.393 kb on - strand, within IAI46_09775at 2071.393 kb on - strand, within IAI46_09775at 2071.498 kb on + strand, within IAI46_09775at 2071.498 kb on + strand, within IAI46_09775at 2071.498 kb on + strand, within IAI46_09775at 2071.505 kb on - strand, within IAI46_09775at 2071.594 kb on + strand, within IAI46_09775at 2071.626 kb on + strand, within IAI46_09775at 2071.628 kb on + strand, within IAI46_09775at 2071.780 kb on + strandat 2071.780 kb on + strandat 2071.784 kb on + strandat 2073.633 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, anaerobic
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2,070,851 + -1.5
2,070,904 + IAI46_09775 0.14 -2.6
2,070,904 + IAI46_09775 0.14 -1.2
2,070,905 - IAI46_09775 0.14 +0.6
2,071,080 - IAI46_09775 0.31 +0.6
2,071,182 - IAI46_09775 0.41 +0.9
2,071,343 + IAI46_09775 0.56 -0.6
2,071,343 + IAI46_09775 0.56 +0.1
2,071,392 + IAI46_09775 0.61 -0.5
2,071,393 - IAI46_09775 0.61 +0.1
2,071,393 - IAI46_09775 0.61 +0.4
2,071,393 - IAI46_09775 0.61 -0.6
2,071,498 + IAI46_09775 0.71 -0.7
2,071,498 + IAI46_09775 0.71 -0.7
2,071,498 + IAI46_09775 0.71 -0.4
2,071,505 - IAI46_09775 0.72 -2.1
2,071,594 + IAI46_09775 0.80 -0.3
2,071,626 + IAI46_09775 0.83 -1.6
2,071,628 + IAI46_09775 0.84 +0.6
2,071,780 + +0.2
2,071,780 + +2.4
2,071,784 + +1.2
2,073,633 + +0.8

Or see this region's nucleotide sequence