Strain Fitness in Serratia liquefaciens MT49 around IAI46_09365

Experiment: Nickel (II) chloride 80 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_09360 and IAI46_09365 are separated by 160 nucleotidesIAI46_09365 and IAI46_09370 are separated by 227 nucleotidesIAI46_09370 and IAI46_09375 are separated by 2 nucleotidesIAI46_09375 and IAI46_09380 are separated by 10 nucleotides IAI46_09360: IAI46_09360 - Pyocin large subunit, at 1,998,078 to 1,998,782 _09360 IAI46_09365: IAI46_09365 - replication protein, at 1,998,943 to 1,999,503 _09365 IAI46_09370: IAI46_09370 - hypothetical protein, at 1,999,731 to 2,000,201 _09370 IAI46_09375: IAI46_09375 - TraR/DksA family transcriptional regulator, at 2,000,204 to 2,000,416 _09375 IAI46_09380: IAI46_09380 - hypothetical protein, at 2,000,427 to 2,001,086 _09380 Position (kb) 1998 1999 2000Strain fitness (log2 ratio) -1 0 1at 1997.953 kb on + strandat 1997.954 kb on - strandat 1997.974 kb on - strandat 1998.185 kb on - strand, within IAI46_09360at 1998.185 kb on - strand, within IAI46_09360at 1998.185 kb on - strand, within IAI46_09360at 1998.305 kb on - strand, within IAI46_09360at 1998.305 kb on - strand, within IAI46_09360at 1998.486 kb on - strand, within IAI46_09360at 1998.815 kb on + strandat 1998.816 kb on - strandat 1998.870 kb on + strandat 1998.871 kb on - strandat 1999.017 kb on + strand, within IAI46_09365at 1999.017 kb on + strand, within IAI46_09365at 1999.090 kb on + strand, within IAI46_09365at 1999.090 kb on + strand, within IAI46_09365at 1999.091 kb on - strand, within IAI46_09365at 1999.143 kb on + strand, within IAI46_09365at 1999.144 kb on - strand, within IAI46_09365at 1999.160 kb on + strand, within IAI46_09365at 1999.161 kb on - strand, within IAI46_09365at 1999.161 kb on - strand, within IAI46_09365at 1999.204 kb on + strand, within IAI46_09365at 1999.212 kb on + strand, within IAI46_09365at 1999.212 kb on + strand, within IAI46_09365at 1999.212 kb on + strand, within IAI46_09365at 1999.213 kb on - strand, within IAI46_09365at 1999.253 kb on - strand, within IAI46_09365at 1999.330 kb on - strand, within IAI46_09365at 1999.395 kb on - strand, within IAI46_09365at 1999.561 kb on - strandat 1999.561 kb on - strandat 1999.563 kb on - strandat 1999.563 kb on - strandat 1999.707 kb on - strandat 1999.707 kb on - strandat 1999.707 kb on - strandat 1999.804 kb on - strand, within IAI46_09370at 1999.868 kb on + strand, within IAI46_09370at 1999.869 kb on - strand, within IAI46_09370at 1999.959 kb on - strand, within IAI46_09370at 1999.959 kb on - strand, within IAI46_09370at 1999.964 kb on + strand, within IAI46_09370at 1999.990 kb on + strand, within IAI46_09370at 2000.243 kb on + strand, within IAI46_09375at 2000.244 kb on - strand, within IAI46_09375at 2000.404 kb on + strandat 2000.405 kb on - strandat 2000.466 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, anaerobic
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1,997,953 + -0.2
1,997,954 - -1.2
1,997,974 - +1.1
1,998,185 - IAI46_09360 0.15 +1.3
1,998,185 - IAI46_09360 0.15 +0.0
1,998,185 - IAI46_09360 0.15 +0.6
1,998,305 - IAI46_09360 0.32 +1.0
1,998,305 - IAI46_09360 0.32 -0.0
1,998,486 - IAI46_09360 0.58 +0.0
1,998,815 + -0.7
1,998,816 - -1.2
1,998,870 + +0.8
1,998,871 - +0.1
1,999,017 + IAI46_09365 0.13 +0.0
1,999,017 + IAI46_09365 0.13 -0.3
1,999,090 + IAI46_09365 0.26 +0.3
1,999,090 + IAI46_09365 0.26 -1.1
1,999,091 - IAI46_09365 0.26 -1.1
1,999,143 + IAI46_09365 0.36 -1.0
1,999,144 - IAI46_09365 0.36 +0.9
1,999,160 + IAI46_09365 0.39 -1.2
1,999,161 - IAI46_09365 0.39 -0.7
1,999,161 - IAI46_09365 0.39 +0.8
1,999,204 + IAI46_09365 0.47 -1.2
1,999,212 + IAI46_09365 0.48 +0.9
1,999,212 + IAI46_09365 0.48 -1.5
1,999,212 + IAI46_09365 0.48 -0.1
1,999,213 - IAI46_09365 0.48 -0.5
1,999,253 - IAI46_09365 0.55 +1.5
1,999,330 - IAI46_09365 0.69 +1.0
1,999,395 - IAI46_09365 0.81 +0.5
1,999,561 - +0.9
1,999,561 - -0.7
1,999,563 - +0.6
1,999,563 - +0.2
1,999,707 - -1.6
1,999,707 - +1.1
1,999,707 - +0.6
1,999,804 - IAI46_09370 0.15 -0.0
1,999,868 + IAI46_09370 0.29 -0.8
1,999,869 - IAI46_09370 0.29 -0.1
1,999,959 - IAI46_09370 0.48 +0.8
1,999,959 - IAI46_09370 0.48 +0.2
1,999,964 + IAI46_09370 0.49 -1.5
1,999,990 + IAI46_09370 0.55 -1.0
2,000,243 + IAI46_09375 0.18 +0.2
2,000,244 - IAI46_09375 0.19 +0.5
2,000,404 + -0.4
2,000,405 - -0.5
2,000,466 - +0.8

Or see this region's nucleotide sequence