Strain Fitness in Serratia liquefaciens MT49 around IAI46_07815

Experiment: Nickel (II) chloride 80 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_07810 and IAI46_07815 are separated by 82 nucleotidesIAI46_07815 and IAI46_07820 are separated by 159 nucleotides IAI46_07810: IAI46_07810 - transcriptional regulator CynR, at 1,649,867 to 1,650,769 _07810 IAI46_07815: IAI46_07815 - hypothetical protein, at 1,650,852 to 1,651,268 _07815 IAI46_07820: IAI46_07820 - ABC-F family ATPase, at 1,651,428 to 1,653,020 _07820 Position (kb) 1650 1651 1652Strain fitness (log2 ratio) -2 -1 0 1at 1650.177 kb on - strand, within IAI46_07810at 1650.236 kb on - strand, within IAI46_07810at 1650.364 kb on + strand, within IAI46_07810at 1650.364 kb on + strand, within IAI46_07810at 1650.365 kb on - strand, within IAI46_07810at 1650.365 kb on - strand, within IAI46_07810at 1650.444 kb on + strand, within IAI46_07810at 1650.445 kb on - strand, within IAI46_07810at 1650.767 kb on + strandat 1650.875 kb on + strandat 1650.876 kb on - strandat 1650.876 kb on - strandat 1651.027 kb on + strand, within IAI46_07815at 1651.028 kb on - strand, within IAI46_07815at 1651.037 kb on - strand, within IAI46_07815at 1651.041 kb on + strand, within IAI46_07815at 1651.041 kb on + strand, within IAI46_07815at 1651.042 kb on - strand, within IAI46_07815at 1651.070 kb on + strand, within IAI46_07815at 1651.070 kb on + strand, within IAI46_07815at 1651.111 kb on - strand, within IAI46_07815at 1651.158 kb on - strand, within IAI46_07815at 1651.210 kb on + strand, within IAI46_07815at 1651.210 kb on + strand, within IAI46_07815at 1651.244 kb on + strandat 1651.244 kb on + strandat 1651.412 kb on - strandat 1651.433 kb on - strandat 1651.433 kb on - strandat 1651.440 kb on - strandat 1651.467 kb on - strandat 1651.493 kb on + strandat 1651.494 kb on - strandat 1651.515 kb on - strandat 1651.516 kb on - strandat 1651.556 kb on + strandat 1651.662 kb on + strand, within IAI46_07820at 1651.663 kb on - strand, within IAI46_07820at 1651.663 kb on - strand, within IAI46_07820at 1651.663 kb on - strand, within IAI46_07820at 1651.734 kb on + strand, within IAI46_07820at 1651.734 kb on + strand, within IAI46_07820at 1651.812 kb on + strand, within IAI46_07820at 1651.875 kb on + strand, within IAI46_07820at 1651.973 kb on + strand, within IAI46_07820at 1651.974 kb on - strand, within IAI46_07820at 1652.031 kb on - strand, within IAI46_07820at 1652.046 kb on - strand, within IAI46_07820at 1652.076 kb on - strand, within IAI46_07820at 1652.124 kb on + strand, within IAI46_07820at 1652.145 kb on + strand, within IAI46_07820at 1652.146 kb on - strand, within IAI46_07820at 1652.146 kb on - strand, within IAI46_07820at 1652.146 kb on - strand, within IAI46_07820at 1652.214 kb on - strand, within IAI46_07820

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, anaerobic
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1,650,177 - IAI46_07810 0.34 -0.1
1,650,236 - IAI46_07810 0.41 -0.4
1,650,364 + IAI46_07810 0.55 +0.3
1,650,364 + IAI46_07810 0.55 +0.0
1,650,365 - IAI46_07810 0.55 -0.0
1,650,365 - IAI46_07810 0.55 -0.1
1,650,444 + IAI46_07810 0.64 -0.0
1,650,445 - IAI46_07810 0.64 -0.3
1,650,767 + +0.4
1,650,875 + -0.3
1,650,876 - -0.6
1,650,876 - +0.4
1,651,027 + IAI46_07815 0.42 +0.4
1,651,028 - IAI46_07815 0.42 +0.6
1,651,037 - IAI46_07815 0.44 +0.1
1,651,041 + IAI46_07815 0.45 +1.0
1,651,041 + IAI46_07815 0.45 -0.0
1,651,042 - IAI46_07815 0.46 +0.9
1,651,070 + IAI46_07815 0.52 +0.1
1,651,070 + IAI46_07815 0.52 -1.0
1,651,111 - IAI46_07815 0.62 -0.4
1,651,158 - IAI46_07815 0.73 +0.0
1,651,210 + IAI46_07815 0.86 -0.1
1,651,210 + IAI46_07815 0.86 +0.5
1,651,244 + -0.1
1,651,244 + -0.8
1,651,412 - -0.4
1,651,433 - +0.9
1,651,433 - +1.4
1,651,440 - -1.5
1,651,467 - +0.5
1,651,493 + -0.0
1,651,494 - +0.0
1,651,515 - +0.5
1,651,516 - +0.9
1,651,556 + +0.7
1,651,662 + IAI46_07820 0.15 -0.6
1,651,663 - IAI46_07820 0.15 +0.5
1,651,663 - IAI46_07820 0.15 -0.0
1,651,663 - IAI46_07820 0.15 +0.6
1,651,734 + IAI46_07820 0.19 -1.0
1,651,734 + IAI46_07820 0.19 -0.5
1,651,812 + IAI46_07820 0.24 +0.7
1,651,875 + IAI46_07820 0.28 +0.8
1,651,973 + IAI46_07820 0.34 +0.9
1,651,974 - IAI46_07820 0.34 -1.1
1,652,031 - IAI46_07820 0.38 -0.1
1,652,046 - IAI46_07820 0.39 -1.0
1,652,076 - IAI46_07820 0.41 -0.7
1,652,124 + IAI46_07820 0.44 +0.9
1,652,145 + IAI46_07820 0.45 -0.5
1,652,146 - IAI46_07820 0.45 -1.8
1,652,146 - IAI46_07820 0.45 -2.0
1,652,146 - IAI46_07820 0.45 +0.0
1,652,214 - IAI46_07820 0.49 -1.7

Or see this region's nucleotide sequence