Strain Fitness in Serratia liquefaciens MT49 around IAI46_04315

Experiment: Nickel (II) chloride 80 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_04305 and IAI46_04310 overlap by 4 nucleotidesIAI46_04310 and IAI46_04315 overlap by 4 nucleotidesIAI46_04315 and IAI46_04320 are separated by 13 nucleotides IAI46_04305: IAI46_04305 - methylthioribulose 1-phosphate dehydratase, at 923,957 to 924,571 _04305 IAI46_04310: IAI46_04310 - acireductone synthase, at 924,568 to 925,257 _04310 IAI46_04315: IAI46_04315 - acireductone dioxygenase, at 925,254 to 925,796 _04315 IAI46_04320: IAI46_04320 - S-methyl-5-thioribose-1-phosphate isomerase, at 925,810 to 926,838 _04320 Position (kb) 925 926Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 924.306 kb on - strand, within IAI46_04305at 924.306 kb on - strand, within IAI46_04305at 924.308 kb on + strand, within IAI46_04305at 924.354 kb on + strand, within IAI46_04305at 924.440 kb on + strand, within IAI46_04305at 924.440 kb on + strand, within IAI46_04305at 924.470 kb on + strand, within IAI46_04305at 924.470 kb on + strand, within IAI46_04305at 924.471 kb on - strand, within IAI46_04305at 924.471 kb on - strand, within IAI46_04305at 924.555 kb on + strandat 924.601 kb on - strandat 924.601 kb on - strandat 924.669 kb on + strand, within IAI46_04310at 924.750 kb on + strand, within IAI46_04310at 924.762 kb on + strand, within IAI46_04310at 924.763 kb on - strand, within IAI46_04310at 924.783 kb on + strand, within IAI46_04310at 924.875 kb on + strand, within IAI46_04310at 924.876 kb on - strand, within IAI46_04310at 924.899 kb on + strand, within IAI46_04310at 924.899 kb on + strand, within IAI46_04310at 924.899 kb on + strand, within IAI46_04310at 924.899 kb on + strand, within IAI46_04310at 924.900 kb on - strand, within IAI46_04310at 924.900 kb on - strand, within IAI46_04310at 924.929 kb on + strand, within IAI46_04310at 924.931 kb on + strand, within IAI46_04310at 924.932 kb on - strand, within IAI46_04310at 924.932 kb on - strand, within IAI46_04310at 924.937 kb on + strand, within IAI46_04310at 924.937 kb on + strand, within IAI46_04310at 925.068 kb on + strand, within IAI46_04310at 925.069 kb on - strand, within IAI46_04310at 925.325 kb on + strand, within IAI46_04315at 925.325 kb on + strand, within IAI46_04315at 925.325 kb on + strand, within IAI46_04315at 925.325 kb on + strand, within IAI46_04315at 925.325 kb on + strand, within IAI46_04315at 925.425 kb on + strand, within IAI46_04315at 925.425 kb on + strand, within IAI46_04315at 925.426 kb on - strand, within IAI46_04315at 925.798 kb on - strandat 925.925 kb on + strand, within IAI46_04320at 925.926 kb on - strand, within IAI46_04320at 926.052 kb on + strand, within IAI46_04320at 926.052 kb on + strand, within IAI46_04320at 926.052 kb on + strand, within IAI46_04320at 926.070 kb on - strand, within IAI46_04320at 926.070 kb on - strand, within IAI46_04320at 926.070 kb on - strand, within IAI46_04320at 926.087 kb on + strand, within IAI46_04320at 926.111 kb on + strand, within IAI46_04320at 926.111 kb on + strand, within IAI46_04320at 926.111 kb on + strand, within IAI46_04320at 926.112 kb on - strand, within IAI46_04320at 926.112 kb on - strand, within IAI46_04320at 926.232 kb on - strand, within IAI46_04320at 926.239 kb on - strand, within IAI46_04320at 926.341 kb on + strand, within IAI46_04320at 926.344 kb on + strand, within IAI46_04320at 926.345 kb on - strand, within IAI46_04320at 926.345 kb on - strand, within IAI46_04320at 926.361 kb on + strand, within IAI46_04320at 926.391 kb on + strand, within IAI46_04320at 926.392 kb on - strand, within IAI46_04320at 926.707 kb on - strand, within IAI46_04320at 926.707 kb on - strand, within IAI46_04320at 926.707 kb on - strand, within IAI46_04320at 926.707 kb on - strand, within IAI46_04320at 926.712 kb on + strand, within IAI46_04320at 926.712 kb on + strand, within IAI46_04320at 926.712 kb on + strand, within IAI46_04320at 926.713 kb on - strand, within IAI46_04320at 926.732 kb on - strand, within IAI46_04320

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, anaerobic
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924,306 - IAI46_04305 0.57 -1.3
924,306 - IAI46_04305 0.57 +1.1
924,308 + IAI46_04305 0.57 -0.3
924,354 + IAI46_04305 0.65 +0.2
924,440 + IAI46_04305 0.79 -3.1
924,440 + IAI46_04305 0.79 -0.1
924,470 + IAI46_04305 0.83 +0.3
924,470 + IAI46_04305 0.83 +1.4
924,471 - IAI46_04305 0.84 +0.2
924,471 - IAI46_04305 0.84 -0.6
924,555 + +1.1
924,601 - +0.6
924,601 - -0.2
924,669 + IAI46_04310 0.15 +0.4
924,750 + IAI46_04310 0.26 +0.2
924,762 + IAI46_04310 0.28 -0.3
924,763 - IAI46_04310 0.28 -1.3
924,783 + IAI46_04310 0.31 +0.7
924,875 + IAI46_04310 0.44 +1.2
924,876 - IAI46_04310 0.45 -0.3
924,899 + IAI46_04310 0.48 +0.8
924,899 + IAI46_04310 0.48 -0.4
924,899 + IAI46_04310 0.48 +0.9
924,899 + IAI46_04310 0.48 -1.0
924,900 - IAI46_04310 0.48 -0.2
924,900 - IAI46_04310 0.48 -0.0
924,929 + IAI46_04310 0.52 +0.7
924,931 + IAI46_04310 0.53 -0.3
924,932 - IAI46_04310 0.53 +0.4
924,932 - IAI46_04310 0.53 +0.0
924,937 + IAI46_04310 0.53 +0.2
924,937 + IAI46_04310 0.53 -0.5
925,068 + IAI46_04310 0.72 -0.1
925,069 - IAI46_04310 0.73 -0.6
925,325 + IAI46_04315 0.13 -0.3
925,325 + IAI46_04315 0.13 +0.2
925,325 + IAI46_04315 0.13 -0.8
925,325 + IAI46_04315 0.13 -0.3
925,325 + IAI46_04315 0.13 -0.0
925,425 + IAI46_04315 0.31 +0.0
925,425 + IAI46_04315 0.31 -0.5
925,426 - IAI46_04315 0.32 +0.6
925,798 - +0.5
925,925 + IAI46_04320 0.11 -0.2
925,926 - IAI46_04320 0.11 +2.0
926,052 + IAI46_04320 0.24 -0.1
926,052 + IAI46_04320 0.24 -0.0
926,052 + IAI46_04320 0.24 -0.2
926,070 - IAI46_04320 0.25 +0.0
926,070 - IAI46_04320 0.25 +0.9
926,070 - IAI46_04320 0.25 +0.2
926,087 + IAI46_04320 0.27 +0.3
926,111 + IAI46_04320 0.29 +0.4
926,111 + IAI46_04320 0.29 +0.6
926,111 + IAI46_04320 0.29 -0.4
926,112 - IAI46_04320 0.29 +1.4
926,112 - IAI46_04320 0.29 -0.2
926,232 - IAI46_04320 0.41 -0.1
926,239 - IAI46_04320 0.42 -0.6
926,341 + IAI46_04320 0.52 +0.3
926,344 + IAI46_04320 0.52 +0.5
926,345 - IAI46_04320 0.52 -0.3
926,345 - IAI46_04320 0.52 +0.3
926,361 + IAI46_04320 0.54 -0.3
926,391 + IAI46_04320 0.56 +0.2
926,392 - IAI46_04320 0.57 -0.2
926,707 - IAI46_04320 0.87 -0.2
926,707 - IAI46_04320 0.87 -0.1
926,707 - IAI46_04320 0.87 +0.4
926,707 - IAI46_04320 0.87 -0.3
926,712 + IAI46_04320 0.88 -0.2
926,712 + IAI46_04320 0.88 -0.1
926,712 + IAI46_04320 0.88 +0.9
926,713 - IAI46_04320 0.88 +1.3
926,732 - IAI46_04320 0.90 +0.8

Or see this region's nucleotide sequence