Experiment: Nickel (II) chloride 80 uM, anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_03955 and IAI46_03960 are separated by 6 nucleotides IAI46_03960 and IAI46_03965 are separated by 40 nucleotides
IAI46_03955: IAI46_03955 - 3-deoxy-7-phosphoheptulonate synthase, at 855,854 to 856,927
_03955
IAI46_03960: IAI46_03960 - bifunctional chorismate mutase/prephenate dehydrogenase, at 856,934 to 858,055
_03960
IAI46_03965: IAI46_03965 - bifunctional chorismate mutase/prephenate dehydratase, at 858,096 to 859,253
_03965
Position (kb) 856
857
858
859 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 856.042 kb on + strand, within IAI46_03955 at 856.043 kb on - strand, within IAI46_03955 at 856.118 kb on + strand, within IAI46_03955 at 856.119 kb on - strand, within IAI46_03955 at 856.121 kb on - strand, within IAI46_03955 at 856.121 kb on - strand, within IAI46_03955 at 856.136 kb on + strand, within IAI46_03955 at 856.136 kb on + strand, within IAI46_03955 at 856.181 kb on - strand, within IAI46_03955 at 856.190 kb on + strand, within IAI46_03955 at 856.190 kb on + strand, within IAI46_03955 at 856.190 kb on + strand, within IAI46_03955 at 856.190 kb on + strand, within IAI46_03955 at 856.190 kb on + strand, within IAI46_03955 at 856.190 kb on + strand, within IAI46_03955 at 856.190 kb on + strand, within IAI46_03955 at 856.262 kb on - strand, within IAI46_03955 at 856.262 kb on - strand, within IAI46_03955 at 856.404 kb on + strand, within IAI46_03955 at 856.453 kb on + strand, within IAI46_03955 at 856.453 kb on + strand, within IAI46_03955 at 856.454 kb on - strand, within IAI46_03955 at 856.490 kb on - strand, within IAI46_03955 at 856.490 kb on - strand, within IAI46_03955 at 856.491 kb on + strand, within IAI46_03955 at 856.492 kb on - strand, within IAI46_03955 at 856.565 kb on - strand, within IAI46_03955 at 856.578 kb on - strand, within IAI46_03955 at 856.647 kb on + strand, within IAI46_03955 at 856.647 kb on + strand, within IAI46_03955 at 856.647 kb on + strand, within IAI46_03955 at 856.648 kb on - strand, within IAI46_03955 at 856.648 kb on - strand, within IAI46_03955 at 856.648 kb on - strand, within IAI46_03955 at 856.772 kb on + strand, within IAI46_03955 at 856.772 kb on + strand, within IAI46_03955 at 856.772 kb on + strand, within IAI46_03955 at 856.772 kb on + strand, within IAI46_03955 at 856.773 kb on - strand, within IAI46_03955 at 856.773 kb on - strand, within IAI46_03955 at 856.773 kb on - strand, within IAI46_03955 at 856.773 kb on - strand, within IAI46_03955 at 856.810 kb on + strand, within IAI46_03955 at 856.810 kb on + strand, within IAI46_03955 at 856.811 kb on - strand, within IAI46_03955 at 856.811 kb on - strand, within IAI46_03955 at 856.844 kb on - strand at 856.844 kb on - strand at 856.844 kb on - strand at 856.844 kb on - strand at 856.846 kb on + strand at 856.846 kb on + strand at 856.858 kb on + strand at 856.859 kb on - strand at 856.879 kb on + strand at 856.879 kb on + strand at 856.879 kb on + strand at 856.925 kb on + strand at 856.925 kb on + strand at 856.926 kb on - strand at 856.928 kb on + strand at 856.928 kb on + strand at 856.928 kb on + strand at 856.929 kb on - strand at 856.929 kb on - strand at 856.929 kb on - strand at 856.929 kb on - strand at 856.933 kb on + strand at 856.933 kb on + strand at 857.041 kb on + strand at 857.066 kb on + strand, within IAI46_03960 at 857.066 kb on + strand, within IAI46_03960 at 857.066 kb on + strand, within IAI46_03960 at 857.066 kb on + strand, within IAI46_03960 at 857.066 kb on + strand, within IAI46_03960 at 857.067 kb on - strand, within IAI46_03960 at 857.180 kb on + strand, within IAI46_03960 at 857.180 kb on + strand, within IAI46_03960 at 857.181 kb on - strand, within IAI46_03960 at 857.181 kb on - strand, within IAI46_03960 at 857.214 kb on + strand, within IAI46_03960 at 857.215 kb on - strand, within IAI46_03960 at 857.344 kb on + strand, within IAI46_03960 at 857.345 kb on - strand, within IAI46_03960 at 857.386 kb on + strand, within IAI46_03960 at 857.387 kb on - strand, within IAI46_03960 at 857.441 kb on - strand, within IAI46_03960 at 857.441 kb on - strand, within IAI46_03960 at 857.545 kb on - strand, within IAI46_03960 at 857.545 kb on - strand, within IAI46_03960 at 857.573 kb on + strand, within IAI46_03960 at 857.573 kb on + strand, within IAI46_03960 at 857.574 kb on - strand, within IAI46_03960 at 857.601 kb on - strand, within IAI46_03960 at 857.651 kb on - strand, within IAI46_03960 at 857.687 kb on - strand, within IAI46_03960 at 857.720 kb on + strand, within IAI46_03960 at 857.854 kb on + strand, within IAI46_03960 at 857.854 kb on + strand, within IAI46_03960 at 857.854 kb on + strand, within IAI46_03960 at 857.854 kb on + strand, within IAI46_03960 at 857.854 kb on + strand, within IAI46_03960 at 857.854 kb on + strand, within IAI46_03960 at 857.855 kb on - strand, within IAI46_03960 at 857.855 kb on - strand, within IAI46_03960 at 857.855 kb on - strand, within IAI46_03960 at 857.855 kb on - strand, within IAI46_03960 at 857.892 kb on - strand, within IAI46_03960 at 857.894 kb on + strand, within IAI46_03960 at 857.894 kb on + strand, within IAI46_03960 at 857.895 kb on - strand, within IAI46_03960 at 857.895 kb on - strand, within IAI46_03960 at 857.990 kb on + strand at 857.991 kb on - strand at 858.053 kb on + strand at 858.060 kb on - strand at 858.093 kb on + strand at 858.093 kb on + strand at 858.213 kb on - strand, within IAI46_03965 at 858.412 kb on - strand, within IAI46_03965 at 858.416 kb on + strand, within IAI46_03965 at 858.425 kb on + strand, within IAI46_03965 at 858.425 kb on + strand, within IAI46_03965 at 858.453 kb on - strand, within IAI46_03965 at 858.453 kb on - strand, within IAI46_03965 at 858.476 kb on - strand, within IAI46_03965 at 858.596 kb on + strand, within IAI46_03965 at 858.596 kb on + strand, within IAI46_03965 at 858.635 kb on + strand, within IAI46_03965 at 858.636 kb on - strand, within IAI46_03965 at 858.636 kb on - strand, within IAI46_03965 at 858.636 kb on - strand, within IAI46_03965 at 858.637 kb on + strand, within IAI46_03965 at 858.637 kb on + strand, within IAI46_03965 at 858.638 kb on - strand, within IAI46_03965 at 858.638 kb on - strand, within IAI46_03965 at 858.638 kb on - strand, within IAI46_03965 at 858.638 kb on - strand, within IAI46_03965 at 858.638 kb on - strand, within IAI46_03965 at 858.639 kb on + strand, within IAI46_03965 at 858.639 kb on + strand, within IAI46_03965 at 858.640 kb on - strand, within IAI46_03965 at 858.640 kb on - strand, within IAI46_03965 at 858.696 kb on - strand, within IAI46_03965 at 858.748 kb on + strand, within IAI46_03965 at 858.749 kb on - strand, within IAI46_03965 at 858.833 kb on + strand, within IAI46_03965 at 858.834 kb on - strand, within IAI46_03965 at 858.889 kb on + strand, within IAI46_03965 at 858.913 kb on + strand, within IAI46_03965 at 858.914 kb on - strand, within IAI46_03965 at 858.914 kb on - strand, within IAI46_03965 at 859.003 kb on - strand, within IAI46_03965 at 859.017 kb on - strand, within IAI46_03965 at 859.043 kb on - strand, within IAI46_03965
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, anaerobic remove 856,042 + IAI46_03955 0.18 +1.7 856,043 - IAI46_03955 0.18 -0.1 856,118 + IAI46_03955 0.25 -0.1 856,119 - IAI46_03955 0.25 +0.7 856,121 - IAI46_03955 0.25 -0.1 856,121 - IAI46_03955 0.25 +0.4 856,136 + IAI46_03955 0.26 -0.4 856,136 + IAI46_03955 0.26 -0.0 856,181 - IAI46_03955 0.30 +0.0 856,190 + IAI46_03955 0.31 -0.7 856,190 + IAI46_03955 0.31 +0.0 856,190 + IAI46_03955 0.31 -0.1 856,190 + IAI46_03955 0.31 +0.3 856,190 + IAI46_03955 0.31 +2.2 856,190 + IAI46_03955 0.31 -0.0 856,190 + IAI46_03955 0.31 +0.2 856,262 - IAI46_03955 0.38 +0.6 856,262 - IAI46_03955 0.38 +0.0 856,404 + IAI46_03955 0.51 -3.2 856,453 + IAI46_03955 0.56 +0.1 856,453 + IAI46_03955 0.56 +1.0 856,454 - IAI46_03955 0.56 -0.4 856,490 - IAI46_03955 0.59 +0.5 856,490 - IAI46_03955 0.59 -0.3 856,491 + IAI46_03955 0.59 -0.2 856,492 - IAI46_03955 0.59 -1.2 856,565 - IAI46_03955 0.66 -0.8 856,578 - IAI46_03955 0.67 -1.2 856,647 + IAI46_03955 0.74 +1.2 856,647 + IAI46_03955 0.74 -0.1 856,647 + IAI46_03955 0.74 -0.1 856,648 - IAI46_03955 0.74 -1.1 856,648 - IAI46_03955 0.74 -0.4 856,648 - IAI46_03955 0.74 -0.7 856,772 + IAI46_03955 0.85 +0.6 856,772 + IAI46_03955 0.85 +0.1 856,772 + IAI46_03955 0.85 +1.4 856,772 + IAI46_03955 0.85 -0.3 856,773 - IAI46_03955 0.86 +0.2 856,773 - IAI46_03955 0.86 +0.4 856,773 - IAI46_03955 0.86 +0.4 856,773 - IAI46_03955 0.86 -0.5 856,810 + IAI46_03955 0.89 +0.0 856,810 + IAI46_03955 0.89 -0.4 856,811 - IAI46_03955 0.89 +1.5 856,811 - IAI46_03955 0.89 +0.8 856,844 - -1.1 856,844 - -0.5 856,844 - +0.6 856,844 - -1.3 856,846 + -0.3 856,846 + +0.8 856,858 + +0.5 856,859 - -0.2 856,879 + +0.2 856,879 + +0.1 856,879 + -0.7 856,925 + +1.1 856,925 + -0.2 856,926 - -0.3 856,928 + +0.1 856,928 + -0.2 856,928 + +0.0 856,929 - +0.3 856,929 - +1.0 856,929 - +1.9 856,929 - +0.2 856,933 + -0.6 856,933 + -0.7 857,041 + +0.9 857,066 + IAI46_03960 0.12 -0.5 857,066 + IAI46_03960 0.12 -1.0 857,066 + IAI46_03960 0.12 -0.1 857,066 + IAI46_03960 0.12 +0.6 857,066 + IAI46_03960 0.12 -0.3 857,067 - IAI46_03960 0.12 +0.0 857,180 + IAI46_03960 0.22 +0.5 857,180 + IAI46_03960 0.22 +1.3 857,181 - IAI46_03960 0.22 +0.9 857,181 - IAI46_03960 0.22 -0.4 857,214 + IAI46_03960 0.25 +1.1 857,215 - IAI46_03960 0.25 -0.4 857,344 + IAI46_03960 0.37 -0.2 857,345 - IAI46_03960 0.37 -0.6 857,386 + IAI46_03960 0.40 -0.0 857,387 - IAI46_03960 0.40 +1.0 857,441 - IAI46_03960 0.45 -0.3 857,441 - IAI46_03960 0.45 -0.5 857,545 - IAI46_03960 0.54 +0.6 857,545 - IAI46_03960 0.54 +1.4 857,573 + IAI46_03960 0.57 -0.1 857,573 + IAI46_03960 0.57 +0.8 857,574 - IAI46_03960 0.57 +0.1 857,601 - IAI46_03960 0.59 -1.0 857,651 - IAI46_03960 0.64 -1.1 857,687 - IAI46_03960 0.67 +0.2 857,720 + IAI46_03960 0.70 -0.1 857,854 + IAI46_03960 0.82 +0.4 857,854 + IAI46_03960 0.82 +1.1 857,854 + IAI46_03960 0.82 -0.0 857,854 + IAI46_03960 0.82 +0.5 857,854 + IAI46_03960 0.82 +0.7 857,854 + IAI46_03960 0.82 +0.3 857,855 - IAI46_03960 0.82 +0.2 857,855 - IAI46_03960 0.82 -1.2 857,855 - IAI46_03960 0.82 -0.4 857,855 - IAI46_03960 0.82 -0.1 857,892 - IAI46_03960 0.85 -0.2 857,894 + IAI46_03960 0.86 +0.6 857,894 + IAI46_03960 0.86 -1.1 857,895 - IAI46_03960 0.86 +0.5 857,895 - IAI46_03960 0.86 -0.5 857,990 + +0.3 857,991 - +0.7 858,053 + -0.1 858,060 - +1.1 858,093 + -2.1 858,093 + +0.9 858,213 - IAI46_03965 0.10 +0.5 858,412 - IAI46_03965 0.27 -1.5 858,416 + IAI46_03965 0.28 +1.1 858,425 + IAI46_03965 0.28 -0.7 858,425 + IAI46_03965 0.28 +0.2 858,453 - IAI46_03965 0.31 -0.5 858,453 - IAI46_03965 0.31 +0.0 858,476 - IAI46_03965 0.33 +1.1 858,596 + IAI46_03965 0.43 -0.2 858,596 + IAI46_03965 0.43 -0.2 858,635 + IAI46_03965 0.47 +0.2 858,636 - IAI46_03965 0.47 +0.3 858,636 - IAI46_03965 0.47 -0.3 858,636 - IAI46_03965 0.47 +0.2 858,637 + IAI46_03965 0.47 +0.0 858,637 + IAI46_03965 0.47 -0.7 858,638 - IAI46_03965 0.47 +1.2 858,638 - IAI46_03965 0.47 -0.5 858,638 - IAI46_03965 0.47 +0.2 858,638 - IAI46_03965 0.47 -0.7 858,638 - IAI46_03965 0.47 -1.7 858,639 + IAI46_03965 0.47 -0.1 858,639 + IAI46_03965 0.47 +1.7 858,640 - IAI46_03965 0.47 +0.5 858,640 - IAI46_03965 0.47 -0.4 858,696 - IAI46_03965 0.52 +0.2 858,748 + IAI46_03965 0.56 +0.1 858,749 - IAI46_03965 0.56 -0.8 858,833 + IAI46_03965 0.64 +0.4 858,834 - IAI46_03965 0.64 +0.2 858,889 + IAI46_03965 0.68 +0.7 858,913 + IAI46_03965 0.71 +0.6 858,914 - IAI46_03965 0.71 +0.3 858,914 - IAI46_03965 0.71 +0.5 859,003 - IAI46_03965 0.78 +0.5 859,017 - IAI46_03965 0.80 +0.1 859,043 - IAI46_03965 0.82 -0.4
Or see this region's nucleotide sequence