Strain Fitness in Serratia liquefaciens MT49 around IAI46_03725

Experiment: Nickel (II) chloride 80 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_03720 and IAI46_03725 are separated by 1 nucleotidesIAI46_03725 and IAI46_03730 are separated by 85 nucleotidesIAI46_03730 and IAI46_03735 are separated by 52 nucleotides IAI46_03720: IAI46_03720 - sulfate adenylyltransferase subunit CysN, at 811,657 to 813,084 _03720 IAI46_03725: IAI46_03725 - adenylyl-sulfate kinase, at 813,086 to 813,715 _03725 IAI46_03730: IAI46_03730 - DUF3561 family protein, at 813,801 to 814,118 _03730 IAI46_03735: IAI46_03735 - amino acid ABC transporter ATP-binding protein, at 814,171 to 814,893 _03735 Position (kb) 813 814Strain fitness (log2 ratio) -2 -1 0 1 2at 812.160 kb on + strand, within IAI46_03720at 812.175 kb on - strand, within IAI46_03720at 812.175 kb on - strand, within IAI46_03720at 812.175 kb on - strand, within IAI46_03720at 812.179 kb on + strand, within IAI46_03720at 812.180 kb on - strand, within IAI46_03720at 812.215 kb on + strand, within IAI46_03720at 812.215 kb on + strand, within IAI46_03720at 812.216 kb on - strand, within IAI46_03720at 812.216 kb on - strand, within IAI46_03720at 812.410 kb on + strand, within IAI46_03720at 812.411 kb on - strand, within IAI46_03720at 812.411 kb on - strand, within IAI46_03720at 812.411 kb on - strand, within IAI46_03720at 812.444 kb on - strand, within IAI46_03720at 812.468 kb on + strand, within IAI46_03720at 812.469 kb on - strand, within IAI46_03720at 812.477 kb on + strand, within IAI46_03720at 812.495 kb on + strand, within IAI46_03720at 812.518 kb on - strand, within IAI46_03720at 812.522 kb on + strand, within IAI46_03720at 812.530 kb on - strand, within IAI46_03720at 812.608 kb on - strand, within IAI46_03720at 812.611 kb on - strand, within IAI46_03720at 812.719 kb on + strand, within IAI46_03720at 812.720 kb on - strand, within IAI46_03720at 812.768 kb on + strand, within IAI46_03720at 812.769 kb on - strand, within IAI46_03720at 812.819 kb on + strand, within IAI46_03720at 812.881 kb on + strand, within IAI46_03720at 812.881 kb on + strand, within IAI46_03720at 812.881 kb on + strand, within IAI46_03720at 812.882 kb on - strand, within IAI46_03720at 812.882 kb on - strand, within IAI46_03720at 813.201 kb on + strand, within IAI46_03725at 813.201 kb on + strand, within IAI46_03725at 813.202 kb on - strand, within IAI46_03725at 813.287 kb on + strand, within IAI46_03725at 813.288 kb on - strand, within IAI46_03725at 813.365 kb on - strand, within IAI46_03725at 813.551 kb on + strand, within IAI46_03725at 813.552 kb on - strand, within IAI46_03725at 813.581 kb on - strand, within IAI46_03725at 813.701 kb on - strandat 813.703 kb on + strandat 813.703 kb on + strandat 813.704 kb on - strandat 813.704 kb on - strandat 813.704 kb on - strandat 813.748 kb on - strandat 813.756 kb on + strandat 813.800 kb on + strandat 813.801 kb on - strandat 813.818 kb on + strandat 813.819 kb on - strandat 813.819 kb on - strandat 813.859 kb on - strand, within IAI46_03730at 813.957 kb on + strand, within IAI46_03730at 813.957 kb on + strand, within IAI46_03730at 813.958 kb on - strand, within IAI46_03730at 813.958 kb on - strand, within IAI46_03730at 814.047 kb on - strand, within IAI46_03730at 814.268 kb on + strand, within IAI46_03735at 814.552 kb on + strand, within IAI46_03735at 814.553 kb on - strand, within IAI46_03735at 814.636 kb on - strand, within IAI46_03735

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, anaerobic
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812,160 + IAI46_03720 0.35 +0.7
812,175 - IAI46_03720 0.36 +1.0
812,175 - IAI46_03720 0.36 +0.2
812,175 - IAI46_03720 0.36 -0.0
812,179 + IAI46_03720 0.37 -1.0
812,180 - IAI46_03720 0.37 -0.9
812,215 + IAI46_03720 0.39 -0.3
812,215 + IAI46_03720 0.39 +0.3
812,216 - IAI46_03720 0.39 +0.6
812,216 - IAI46_03720 0.39 +0.0
812,410 + IAI46_03720 0.53 +1.7
812,411 - IAI46_03720 0.53 +0.4
812,411 - IAI46_03720 0.53 +0.5
812,411 - IAI46_03720 0.53 -0.9
812,444 - IAI46_03720 0.55 -0.0
812,468 + IAI46_03720 0.57 +0.8
812,469 - IAI46_03720 0.57 +0.6
812,477 + IAI46_03720 0.57 -0.4
812,495 + IAI46_03720 0.59 -0.8
812,518 - IAI46_03720 0.60 +0.6
812,522 + IAI46_03720 0.61 +0.1
812,530 - IAI46_03720 0.61 -1.1
812,608 - IAI46_03720 0.67 -0.2
812,611 - IAI46_03720 0.67 -0.5
812,719 + IAI46_03720 0.74 +0.7
812,720 - IAI46_03720 0.74 +0.3
812,768 + IAI46_03720 0.78 +0.7
812,769 - IAI46_03720 0.78 -1.1
812,819 + IAI46_03720 0.81 +2.0
812,881 + IAI46_03720 0.86 -0.2
812,881 + IAI46_03720 0.86 -0.7
812,881 + IAI46_03720 0.86 +0.1
812,882 - IAI46_03720 0.86 +0.7
812,882 - IAI46_03720 0.86 +0.1
813,201 + IAI46_03725 0.18 -1.2
813,201 + IAI46_03725 0.18 +0.2
813,202 - IAI46_03725 0.18 -0.9
813,287 + IAI46_03725 0.32 -0.6
813,288 - IAI46_03725 0.32 -0.5
813,365 - IAI46_03725 0.44 -0.8
813,551 + IAI46_03725 0.74 +0.5
813,552 - IAI46_03725 0.74 +0.5
813,581 - IAI46_03725 0.79 -0.4
813,701 - +0.2
813,703 + -0.0
813,703 + +1.2
813,704 - +0.0
813,704 - -0.3
813,704 - -0.6
813,748 - +0.3
813,756 + -0.5
813,800 + +0.2
813,801 - -0.8
813,818 + +0.3
813,819 - +0.1
813,819 - +0.1
813,859 - IAI46_03730 0.18 +0.0
813,957 + IAI46_03730 0.49 -2.0
813,957 + IAI46_03730 0.49 -0.9
813,958 - IAI46_03730 0.49 -0.1
813,958 - IAI46_03730 0.49 +0.1
814,047 - IAI46_03730 0.77 +0.4
814,268 + IAI46_03735 0.13 -0.3
814,552 + IAI46_03735 0.53 -0.0
814,553 - IAI46_03735 0.53 +0.4
814,636 - IAI46_03735 0.64 +0.3

Or see this region's nucleotide sequence