Strain Fitness in Serratia liquefaciens MT49 around IAI46_02465

Experiment: Nickel (II) chloride 80 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_02460 and IAI46_02465 are separated by 520 nucleotidesIAI46_02465 and IAI46_02470 are separated by 358 nucleotides IAI46_02460: IAI46_02460 - LysE family translocator, at 527,571 to 528,182 _02460 IAI46_02465: IAI46_02465 - carbonic anhydrase, at 528,703 to 529,338 _02465 IAI46_02470: IAI46_02470 - HNH endonuclease, at 529,697 to 530,470 _02470 Position (kb) 528 529 530Strain fitness (log2 ratio) -2 -1 0 1 2at 527.747 kb on - strand, within IAI46_02460at 527.747 kb on - strand, within IAI46_02460at 527.753 kb on - strand, within IAI46_02460at 527.756 kb on + strand, within IAI46_02460at 527.756 kb on + strand, within IAI46_02460at 527.756 kb on + strand, within IAI46_02460at 528.055 kb on - strand, within IAI46_02460at 528.358 kb on + strandat 528.444 kb on + strandat 528.444 kb on + strandat 528.444 kb on + strandat 528.445 kb on - strandat 528.446 kb on + strandat 528.446 kb on + strandat 528.447 kb on - strandat 528.453 kb on + strandat 528.565 kb on - strandat 528.575 kb on + strandat 528.666 kb on - strandat 528.673 kb on + strandat 528.682 kb on + strandat 528.703 kb on - strandat 528.703 kb on - strandat 528.711 kb on + strandat 528.711 kb on + strandat 528.711 kb on + strandat 528.711 kb on + strandat 528.711 kb on + strandat 528.712 kb on - strandat 528.712 kb on - strandat 528.759 kb on + strandat 528.799 kb on - strand, within IAI46_02465at 528.950 kb on - strand, within IAI46_02465at 529.022 kb on + strand, within IAI46_02465at 529.075 kb on + strand, within IAI46_02465at 529.075 kb on + strand, within IAI46_02465at 529.075 kb on + strand, within IAI46_02465at 529.075 kb on + strand, within IAI46_02465at 529.075 kb on + strand, within IAI46_02465at 529.076 kb on - strand, within IAI46_02465at 529.176 kb on + strand, within IAI46_02465at 529.176 kb on + strand, within IAI46_02465at 529.183 kb on - strand, within IAI46_02465at 529.183 kb on - strand, within IAI46_02465at 529.183 kb on - strand, within IAI46_02465at 529.183 kb on - strand, within IAI46_02465at 529.183 kb on - strand, within IAI46_02465at 529.246 kb on + strand, within IAI46_02465at 529.247 kb on - strand, within IAI46_02465at 529.354 kb on + strandat 529.355 kb on - strandat 529.355 kb on - strandat 529.394 kb on + strandat 529.400 kb on + strandat 529.406 kb on + strandat 529.430 kb on + strandat 529.431 kb on - strandat 529.471 kb on + strandat 529.545 kb on - strandat 529.549 kb on + strandat 529.596 kb on - strandat 529.604 kb on - strandat 529.645 kb on - strandat 529.688 kb on - strandat 529.695 kb on + strandat 529.756 kb on + strandat 529.803 kb on + strand, within IAI46_02470at 529.825 kb on - strand, within IAI46_02470at 529.847 kb on + strand, within IAI46_02470at 529.888 kb on + strand, within IAI46_02470at 529.988 kb on - strand, within IAI46_02470at 529.994 kb on - strand, within IAI46_02470at 529.994 kb on - strand, within IAI46_02470at 530.040 kb on + strand, within IAI46_02470at 530.046 kb on + strand, within IAI46_02470at 530.047 kb on - strand, within IAI46_02470at 530.047 kb on - strand, within IAI46_02470at 530.048 kb on + strand, within IAI46_02470at 530.072 kb on + strand, within IAI46_02470at 530.072 kb on + strand, within IAI46_02470at 530.073 kb on - strand, within IAI46_02470at 530.138 kb on - strand, within IAI46_02470at 530.300 kb on + strand, within IAI46_02470at 530.301 kb on - strand, within IAI46_02470at 530.314 kb on + strand, within IAI46_02470at 530.315 kb on - strand, within IAI46_02470at 530.318 kb on + strand, within IAI46_02470at 530.318 kb on + strand, within IAI46_02470at 530.319 kb on - strand, within IAI46_02470at 530.319 kb on - strand, within IAI46_02470

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, anaerobic
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527,747 - IAI46_02460 0.29 +1.1
527,747 - IAI46_02460 0.29 +0.5
527,753 - IAI46_02460 0.30 +0.1
527,756 + IAI46_02460 0.30 +0.1
527,756 + IAI46_02460 0.30 +0.0
527,756 + IAI46_02460 0.30 +0.3
528,055 - IAI46_02460 0.79 +1.7
528,358 + -0.2
528,444 + +0.3
528,444 + +0.7
528,444 + +1.5
528,445 - -0.0
528,446 + +0.1
528,446 + +0.7
528,447 - +0.3
528,453 + -0.4
528,565 - +0.5
528,575 + -1.5
528,666 - -0.3
528,673 + +0.3
528,682 + -0.9
528,703 - -0.8
528,703 - -0.5
528,711 + +0.5
528,711 + -0.6
528,711 + +0.0
528,711 + -1.0
528,711 + -0.7
528,712 - -0.5
528,712 - +0.2
528,759 + +1.2
528,799 - IAI46_02465 0.15 -0.8
528,950 - IAI46_02465 0.39 +0.3
529,022 + IAI46_02465 0.50 -2.2
529,075 + IAI46_02465 0.58 -0.3
529,075 + IAI46_02465 0.58 +0.4
529,075 + IAI46_02465 0.58 +0.2
529,075 + IAI46_02465 0.58 -0.7
529,075 + IAI46_02465 0.58 +0.1
529,076 - IAI46_02465 0.59 -1.5
529,176 + IAI46_02465 0.74 +0.3
529,176 + IAI46_02465 0.74 -0.0
529,183 - IAI46_02465 0.75 +0.7
529,183 - IAI46_02465 0.75 -0.3
529,183 - IAI46_02465 0.75 -0.0
529,183 - IAI46_02465 0.75 -0.8
529,183 - IAI46_02465 0.75 +0.7
529,246 + IAI46_02465 0.85 +0.5
529,247 - IAI46_02465 0.86 -0.4
529,354 + -0.4
529,355 - -1.0
529,355 - -0.1
529,394 + +0.6
529,400 + +0.5
529,406 + -1.3
529,430 + -0.6
529,431 - +0.0
529,471 + +0.2
529,545 - +0.5
529,549 + -0.9
529,596 - +0.3
529,604 - +0.2
529,645 - +1.0
529,688 - +1.9
529,695 + +0.4
529,756 + +0.3
529,803 + IAI46_02470 0.14 +0.5
529,825 - IAI46_02470 0.17 +1.2
529,847 + IAI46_02470 0.19 -0.6
529,888 + IAI46_02470 0.25 +0.1
529,988 - IAI46_02470 0.38 +0.0
529,994 - IAI46_02470 0.38 +0.3
529,994 - IAI46_02470 0.38 +0.2
530,040 + IAI46_02470 0.44 +0.3
530,046 + IAI46_02470 0.45 -2.1
530,047 - IAI46_02470 0.45 +0.3
530,047 - IAI46_02470 0.45 -1.2
530,048 + IAI46_02470 0.45 -0.4
530,072 + IAI46_02470 0.48 +0.1
530,072 + IAI46_02470 0.48 +0.2
530,073 - IAI46_02470 0.49 +0.8
530,138 - IAI46_02470 0.57 -0.3
530,300 + IAI46_02470 0.78 +0.3
530,301 - IAI46_02470 0.78 -0.1
530,314 + IAI46_02470 0.80 -0.4
530,315 - IAI46_02470 0.80 -0.9
530,318 + IAI46_02470 0.80 -0.4
530,318 + IAI46_02470 0.80 +0.4
530,319 - IAI46_02470 0.80 -0.2
530,319 - IAI46_02470 0.80 +0.8

Or see this region's nucleotide sequence