Strain Fitness in Serratia liquefaciens MT49 around IAI46_01945

Experiment: Nickel (II) chloride 80 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_01935 and IAI46_01940 are separated by 68 nucleotidesIAI46_01940 and IAI46_01945 overlap by 1 nucleotidesIAI46_01945 and IAI46_01950 are separated by 123 nucleotidesIAI46_01950 and IAI46_01955 are separated by 255 nucleotides IAI46_01935: IAI46_01935 - translation initiation factor IF-2, at 413,837 to 416,524 _01935 IAI46_01940: IAI46_01940 - 30S ribosome-binding factor RbfA, at 416,593 to 417,003 _01940 IAI46_01945: IAI46_01945 - tRNA pseudouridine(55) synthase TruB, at 417,003 to 417,947 _01945 IAI46_01950: IAI46_01950 - 30S ribosomal protein S15, at 418,071 to 418,340 _01950 IAI46_01955: IAI46_01955 - polyribonucleotide nucleotidyltransferase, at 418,596 to 420,713 _01955 Position (kb) 417 418Strain fitness (log2 ratio) -2 -1 0 1 2at 416.528 kb on + strandat 416.541 kb on + strandat 416.948 kb on + strand, within IAI46_01940at 417.001 kb on + strandat 417.001 kb on + strandat 417.002 kb on - strandat 417.032 kb on + strandat 417.032 kb on + strandat 417.098 kb on - strand, within IAI46_01945at 417.108 kb on + strand, within IAI46_01945at 417.108 kb on + strand, within IAI46_01945at 417.108 kb on + strand, within IAI46_01945at 417.109 kb on - strand, within IAI46_01945at 417.109 kb on - strand, within IAI46_01945at 417.110 kb on + strand, within IAI46_01945at 417.237 kb on - strand, within IAI46_01945at 417.263 kb on + strand, within IAI46_01945at 417.264 kb on - strand, within IAI46_01945at 417.379 kb on - strand, within IAI46_01945at 417.379 kb on - strand, within IAI46_01945at 417.394 kb on - strand, within IAI46_01945at 417.394 kb on - strand, within IAI46_01945at 417.411 kb on + strand, within IAI46_01945at 417.417 kb on + strand, within IAI46_01945at 417.417 kb on + strand, within IAI46_01945at 417.417 kb on + strand, within IAI46_01945at 417.417 kb on + strand, within IAI46_01945at 417.417 kb on + strand, within IAI46_01945at 417.417 kb on + strand, within IAI46_01945at 417.418 kb on - strand, within IAI46_01945at 417.418 kb on - strand, within IAI46_01945at 417.418 kb on - strand, within IAI46_01945at 417.468 kb on + strand, within IAI46_01945at 417.469 kb on - strand, within IAI46_01945at 417.537 kb on + strand, within IAI46_01945at 417.537 kb on + strand, within IAI46_01945at 417.537 kb on + strand, within IAI46_01945at 417.538 kb on - strand, within IAI46_01945at 417.538 kb on - strand, within IAI46_01945at 417.625 kb on - strand, within IAI46_01945at 417.795 kb on - strand, within IAI46_01945at 417.795 kb on - strand, within IAI46_01945at 417.844 kb on + strand, within IAI46_01945at 417.844 kb on + strand, within IAI46_01945at 417.844 kb on + strand, within IAI46_01945at 417.845 kb on - strand, within IAI46_01945at 417.845 kb on - strand, within IAI46_01945at 417.845 kb on - strand, within IAI46_01945at 417.845 kb on - strand, within IAI46_01945at 417.845 kb on - strand, within IAI46_01945at 417.845 kb on - strand, within IAI46_01945at 417.845 kb on - strand, within IAI46_01945at 417.845 kb on - strand, within IAI46_01945at 417.848 kb on + strand, within IAI46_01945at 417.848 kb on + strand, within IAI46_01945at 417.848 kb on + strand, within IAI46_01945at 417.849 kb on - strand, within IAI46_01945at 417.890 kb on + strandat 418.410 kb on + strandat 418.415 kb on + strandat 418.494 kb on + strandat 418.495 kb on - strandat 418.507 kb on + strandat 418.508 kb on - strandat 418.521 kb on + strandat 418.522 kb on - strandat 418.564 kb on + strandat 418.565 kb on - strandat 418.578 kb on + strandat 418.583 kb on + strandat 418.584 kb on - strandat 418.591 kb on + strandat 418.592 kb on - strandat 418.637 kb on + strandat 418.638 kb on - strandat 418.638 kb on - strandat 418.646 kb on + strandat 418.658 kb on + strandat 418.659 kb on - strandat 418.726 kb on + strandat 418.726 kb on + strandat 418.727 kb on - strandat 418.782 kb on + strandat 418.793 kb on + strandat 418.797 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, anaerobic
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416,528 + +0.2
416,541 + -0.7
416,948 + IAI46_01940 0.86 -1.3
417,001 + +0.7
417,001 + -0.3
417,002 - +0.3
417,032 + +0.4
417,032 + +0.1
417,098 - IAI46_01945 0.10 +0.7
417,108 + IAI46_01945 0.11 -0.1
417,108 + IAI46_01945 0.11 +0.3
417,108 + IAI46_01945 0.11 +0.3
417,109 - IAI46_01945 0.11 +1.5
417,109 - IAI46_01945 0.11 +0.7
417,110 + IAI46_01945 0.11 -0.7
417,237 - IAI46_01945 0.25 -1.0
417,263 + IAI46_01945 0.28 +0.6
417,264 - IAI46_01945 0.28 +2.0
417,379 - IAI46_01945 0.40 -0.7
417,379 - IAI46_01945 0.40 +1.1
417,394 - IAI46_01945 0.41 -0.4
417,394 - IAI46_01945 0.41 +0.2
417,411 + IAI46_01945 0.43 +0.2
417,417 + IAI46_01945 0.44 +0.6
417,417 + IAI46_01945 0.44 -0.3
417,417 + IAI46_01945 0.44 +0.5
417,417 + IAI46_01945 0.44 -0.3
417,417 + IAI46_01945 0.44 -0.1
417,417 + IAI46_01945 0.44 -1.7
417,418 - IAI46_01945 0.44 -0.2
417,418 - IAI46_01945 0.44 +0.6
417,418 - IAI46_01945 0.44 +0.6
417,468 + IAI46_01945 0.49 +0.2
417,469 - IAI46_01945 0.49 -0.4
417,537 + IAI46_01945 0.57 -0.6
417,537 + IAI46_01945 0.57 -0.2
417,537 + IAI46_01945 0.57 -0.1
417,538 - IAI46_01945 0.57 -0.5
417,538 - IAI46_01945 0.57 -0.2
417,625 - IAI46_01945 0.66 -0.9
417,795 - IAI46_01945 0.84 -0.7
417,795 - IAI46_01945 0.84 +0.2
417,844 + IAI46_01945 0.89 +0.5
417,844 + IAI46_01945 0.89 +0.5
417,844 + IAI46_01945 0.89 +0.5
417,845 - IAI46_01945 0.89 +0.5
417,845 - IAI46_01945 0.89 -0.1
417,845 - IAI46_01945 0.89 -1.5
417,845 - IAI46_01945 0.89 +0.7
417,845 - IAI46_01945 0.89 -0.0
417,845 - IAI46_01945 0.89 -0.5
417,845 - IAI46_01945 0.89 +0.1
417,845 - IAI46_01945 0.89 -0.3
417,848 + IAI46_01945 0.89 -0.3
417,848 + IAI46_01945 0.89 -0.4
417,848 + IAI46_01945 0.89 -0.1
417,849 - IAI46_01945 0.90 -0.0
417,890 + +0.5
418,410 + -0.3
418,415 + -1.3
418,494 + +0.1
418,495 - +0.7
418,507 + +0.5
418,508 - -1.5
418,521 + +0.1
418,522 - +0.3
418,564 + +0.3
418,565 - -0.5
418,578 + -0.5
418,583 + +0.4
418,584 - -0.5
418,591 + -1.2
418,592 - -2.0
418,637 + +1.4
418,638 - -0.5
418,638 - -1.0
418,646 + -1.6
418,658 + -0.5
418,659 - -0.7
418,726 + -1.0
418,726 + -1.5
418,727 - +1.3
418,782 + -0.1
418,793 + +0.3
418,797 + -0.3

Or see this region's nucleotide sequence