Strain Fitness in Serratia liquefaciens MT49 around IAI46_01520

Experiment: Nickel (II) chloride 80 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_01505 and IAI46_01510 are separated by 42 nucleotidesIAI46_01510 and IAI46_01515 are separated by 68 nucleotidesIAI46_01515 and IAI46_01520 are separated by 122 nucleotidesIAI46_01520 and IAI46_01525 are separated by 215 nucleotidesIAI46_01525 and IAI46_01530 overlap by 7 nucleotides IAI46_01505: IAI46_01505 - EF-P beta-lysylation protein EpmB, at 333,889 to 334,917 _01505 IAI46_01510: IAI46_01510 - elongation factor P, at 334,960 to 335,526 _01510 IAI46_01515: IAI46_01515 - entericidin A/B family lipoprotein, at 335,595 to 335,726 _01515 IAI46_01520: IAI46_01520 - entericidin A/B family lipoprotein, at 335,849 to 335,980 _01520 IAI46_01525: IAI46_01525 - quaternary ammonium compound efflux SMR transporter SugE, at 336,196 to 336,513 _01525 IAI46_01530: IAI46_01530 - outer membrane lipoprotein Blc, at 336,507 to 337,040 _01530 Position (kb) 335 336Strain fitness (log2 ratio) -2 -1 0 1at 335.524 kb on + strandat 335.566 kb on - strandat 335.574 kb on + strandat 335.574 kb on + strandat 335.575 kb on - strandat 335.593 kb on - strandat 335.596 kb on + strandat 335.596 kb on + strandat 335.597 kb on - strandat 335.597 kb on - strandat 335.597 kb on - strandat 335.635 kb on + strand, within IAI46_01515at 335.637 kb on - strand, within IAI46_01515at 335.657 kb on + strand, within IAI46_01515at 335.660 kb on + strand, within IAI46_01515at 335.661 kb on - strand, within IAI46_01515at 335.705 kb on + strand, within IAI46_01515at 335.706 kb on - strand, within IAI46_01515at 335.725 kb on - strandat 335.744 kb on - strandat 335.744 kb on - strandat 335.748 kb on + strandat 335.796 kb on + strandat 335.800 kb on - strandat 335.800 kb on - strandat 335.800 kb on - strandat 335.800 kb on - strandat 335.805 kb on + strandat 335.837 kb on - strandat 335.837 kb on - strandat 335.837 kb on - strandat 335.837 kb on - strandat 335.837 kb on - strandat 335.849 kb on - strandat 335.863 kb on + strand, within IAI46_01520at 335.978 kb on + strandat 335.978 kb on + strandat 335.979 kb on - strandat 335.979 kb on - strandat 335.989 kb on - strandat 336.001 kb on + strandat 336.002 kb on - strandat 336.059 kb on + strandat 336.059 kb on + strandat 336.059 kb on + strandat 336.059 kb on + strandat 336.060 kb on - strandat 336.080 kb on + strandat 336.080 kb on + strandat 336.080 kb on + strandat 336.081 kb on - strandat 336.105 kb on + strandat 336.105 kb on + strandat 336.105 kb on + strandat 336.105 kb on + strandat 336.106 kb on - strandat 336.108 kb on - strandat 336.108 kb on - strandat 336.108 kb on - strandat 336.108 kb on - strandat 336.120 kb on + strandat 336.131 kb on + strandat 336.150 kb on - strandat 336.207 kb on + strandat 336.207 kb on + strandat 336.208 kb on - strandat 336.216 kb on + strandat 336.240 kb on - strand, within IAI46_01525at 336.260 kb on - strand, within IAI46_01525at 336.260 kb on - strand, within IAI46_01525at 336.295 kb on - strand, within IAI46_01525at 336.295 kb on - strand, within IAI46_01525at 336.295 kb on - strand, within IAI46_01525at 336.295 kb on - strand, within IAI46_01525at 336.297 kb on + strand, within IAI46_01525at 336.298 kb on - strand, within IAI46_01525at 336.370 kb on + strand, within IAI46_01525at 336.411 kb on + strand, within IAI46_01525at 336.411 kb on + strand, within IAI46_01525at 336.425 kb on + strand, within IAI46_01525at 336.425 kb on + strand, within IAI46_01525at 336.425 kb on + strand, within IAI46_01525at 336.426 kb on - strand, within IAI46_01525at 336.426 kb on - strand, within IAI46_01525at 336.426 kb on - strand, within IAI46_01525at 336.485 kb on + strandat 336.537 kb on + strandat 336.537 kb on + strandat 336.537 kb on + strandat 336.538 kb on - strandat 336.538 kb on - strandat 336.542 kb on + strandat 336.543 kb on - strandat 336.579 kb on + strand, within IAI46_01530at 336.580 kb on - strand, within IAI46_01530at 336.625 kb on - strand, within IAI46_01530at 336.625 kb on - strand, within IAI46_01530at 336.634 kb on + strand, within IAI46_01530at 336.695 kb on + strand, within IAI46_01530at 336.695 kb on + strand, within IAI46_01530at 336.697 kb on + strand, within IAI46_01530at 336.698 kb on - strand, within IAI46_01530at 336.741 kb on + strand, within IAI46_01530at 336.763 kb on + strand, within IAI46_01530at 336.764 kb on - strand, within IAI46_01530at 336.806 kb on + strand, within IAI46_01530at 336.806 kb on + strand, within IAI46_01530at 336.806 kb on + strand, within IAI46_01530at 336.853 kb on + strand, within IAI46_01530at 336.854 kb on - strand, within IAI46_01530at 336.914 kb on - strand, within IAI46_01530at 336.928 kb on + strand, within IAI46_01530at 336.929 kb on - strand, within IAI46_01530at 336.929 kb on - strand, within IAI46_01530at 336.954 kb on + strand, within IAI46_01530at 336.954 kb on + strand, within IAI46_01530

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, anaerobic
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335,524 + +0.9
335,566 - -0.6
335,574 + -0.6
335,574 + +0.3
335,575 - -0.1
335,593 - +0.7
335,596 + +1.7
335,596 + -0.1
335,597 - +0.3
335,597 - -1.1
335,597 - +0.4
335,635 + IAI46_01515 0.30 +1.0
335,637 - IAI46_01515 0.32 +0.2
335,657 + IAI46_01515 0.47 +1.0
335,660 + IAI46_01515 0.49 -0.3
335,661 - IAI46_01515 0.50 -0.1
335,705 + IAI46_01515 0.83 -0.5
335,706 - IAI46_01515 0.84 -0.3
335,725 - +0.6
335,744 - +0.3
335,744 - +0.5
335,748 + -0.2
335,796 + -0.1
335,800 - +0.2
335,800 - +0.2
335,800 - +0.6
335,800 - +0.5
335,805 + -0.5
335,837 - -0.5
335,837 - +0.6
335,837 - -0.1
335,837 - -0.4
335,837 - -2.1
335,849 - -0.2
335,863 + IAI46_01520 0.11 +0.5
335,978 + +0.1
335,978 + +0.2
335,979 - -0.8
335,979 - +0.7
335,989 - +0.1
336,001 + -0.1
336,002 - +0.4
336,059 + -0.0
336,059 + +0.2
336,059 + -0.1
336,059 + -1.2
336,060 - +0.8
336,080 + +0.3
336,080 + +0.6
336,080 + -0.0
336,081 - +0.4
336,105 + +0.4
336,105 + -1.1
336,105 + +0.0
336,105 + +0.2
336,106 - +0.0
336,108 - -0.5
336,108 - -0.6
336,108 - +0.3
336,108 - +0.2
336,120 + -1.1
336,131 + -0.2
336,150 - -0.0
336,207 + -0.6
336,207 + -1.1
336,208 - -1.0
336,216 + +0.1
336,240 - IAI46_01525 0.14 +0.2
336,260 - IAI46_01525 0.20 -0.3
336,260 - IAI46_01525 0.20 +0.1
336,295 - IAI46_01525 0.31 +1.7
336,295 - IAI46_01525 0.31 +0.8
336,295 - IAI46_01525 0.31 -1.0
336,295 - IAI46_01525 0.31 +0.5
336,297 + IAI46_01525 0.32 +0.0
336,298 - IAI46_01525 0.32 +0.6
336,370 + IAI46_01525 0.55 +0.4
336,411 + IAI46_01525 0.68 +0.3
336,411 + IAI46_01525 0.68 -0.2
336,425 + IAI46_01525 0.72 +0.3
336,425 + IAI46_01525 0.72 -0.6
336,425 + IAI46_01525 0.72 +0.4
336,426 - IAI46_01525 0.72 -0.4
336,426 - IAI46_01525 0.72 -0.3
336,426 - IAI46_01525 0.72 +0.1
336,485 + -1.3
336,537 + +0.0
336,537 + +0.0
336,537 + +0.4
336,538 - +0.8
336,538 - -0.9
336,542 + -0.5
336,543 - +0.4
336,579 + IAI46_01530 0.13 -0.2
336,580 - IAI46_01530 0.14 -0.8
336,625 - IAI46_01530 0.22 -0.5
336,625 - IAI46_01530 0.22 -0.8
336,634 + IAI46_01530 0.24 -1.5
336,695 + IAI46_01530 0.35 +1.4
336,695 + IAI46_01530 0.35 +0.6
336,697 + IAI46_01530 0.36 +0.2
336,698 - IAI46_01530 0.36 +0.4
336,741 + IAI46_01530 0.44 -1.4
336,763 + IAI46_01530 0.48 +1.2
336,764 - IAI46_01530 0.48 -0.7
336,806 + IAI46_01530 0.56 +0.6
336,806 + IAI46_01530 0.56 +0.9
336,806 + IAI46_01530 0.56 +0.2
336,853 + IAI46_01530 0.65 +0.6
336,854 - IAI46_01530 0.65 -1.0
336,914 - IAI46_01530 0.76 +0.6
336,928 + IAI46_01530 0.79 +0.2
336,929 - IAI46_01530 0.79 +0.3
336,929 - IAI46_01530 0.79 +0.6
336,954 + IAI46_01530 0.84 -0.4
336,954 + IAI46_01530 0.84 -0.5

Or see this region's nucleotide sequence