Strain Fitness in Serratia liquefaciens MT49 around IAI46_01130

Experiment: Nickel (II) chloride 80 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_01125 and IAI46_01130 are separated by 10 nucleotidesIAI46_01130 and IAI46_01135 are separated by 233 nucleotides IAI46_01125: IAI46_01125 - acetyl-CoA C-acyltransferase FadA, at 248,715 to 249,878 _01125 IAI46_01130: IAI46_01130 - fatty acid oxidation complex subunit alpha FadB, at 249,889 to 252,078 _01130 IAI46_01135: IAI46_01135 - MFS transporter, at 252,312 to 253,508 _01135 Position (kb) 249 250 251 252 253Strain fitness (log2 ratio) -2 -1 0 1 2at 248.908 kb on - strand, within IAI46_01125at 248.908 kb on - strand, within IAI46_01125at 249.268 kb on + strand, within IAI46_01125at 249.268 kb on + strand, within IAI46_01125at 249.269 kb on - strand, within IAI46_01125at 249.329 kb on - strand, within IAI46_01125at 249.401 kb on + strand, within IAI46_01125at 249.401 kb on + strand, within IAI46_01125at 249.401 kb on + strand, within IAI46_01125at 249.402 kb on - strand, within IAI46_01125at 249.402 kb on - strand, within IAI46_01125at 249.408 kb on + strand, within IAI46_01125at 249.408 kb on + strand, within IAI46_01125at 249.408 kb on + strand, within IAI46_01125at 249.409 kb on - strand, within IAI46_01125at 249.409 kb on - strand, within IAI46_01125at 249.518 kb on + strand, within IAI46_01125at 249.518 kb on + strand, within IAI46_01125at 249.518 kb on + strand, within IAI46_01125at 249.518 kb on + strand, within IAI46_01125at 249.519 kb on - strand, within IAI46_01125at 249.519 kb on - strand, within IAI46_01125at 249.680 kb on + strand, within IAI46_01125at 249.681 kb on - strand, within IAI46_01125at 249.718 kb on + strand, within IAI46_01125at 249.849 kb on + strandat 249.850 kb on - strandat 249.863 kb on + strandat 249.864 kb on - strandat 249.864 kb on - strandat 249.868 kb on - strandat 249.868 kb on - strandat 249.882 kb on + strandat 249.883 kb on - strandat 249.942 kb on - strandat 249.942 kb on - strandat 249.942 kb on - strandat 249.951 kb on + strandat 249.952 kb on - strandat 249.990 kb on - strandat 249.990 kb on - strandat 250.031 kb on + strandat 250.032 kb on - strandat 250.059 kb on - strandat 250.067 kb on - strandat 250.067 kb on - strandat 250.305 kb on - strand, within IAI46_01130at 250.348 kb on - strand, within IAI46_01130at 250.365 kb on + strand, within IAI46_01130at 250.390 kb on - strand, within IAI46_01130at 250.464 kb on - strand, within IAI46_01130at 250.548 kb on + strand, within IAI46_01130at 250.623 kb on + strand, within IAI46_01130at 250.624 kb on - strand, within IAI46_01130at 250.640 kb on + strand, within IAI46_01130at 250.641 kb on - strand, within IAI46_01130at 250.659 kb on + strand, within IAI46_01130at 250.659 kb on + strand, within IAI46_01130at 250.659 kb on + strand, within IAI46_01130at 250.660 kb on - strand, within IAI46_01130at 250.660 kb on - strand, within IAI46_01130at 250.660 kb on - strand, within IAI46_01130at 250.696 kb on + strand, within IAI46_01130at 250.714 kb on + strand, within IAI46_01130at 250.797 kb on + strand, within IAI46_01130at 250.797 kb on + strand, within IAI46_01130at 250.797 kb on + strand, within IAI46_01130at 250.798 kb on - strand, within IAI46_01130at 250.919 kb on + strand, within IAI46_01130at 250.919 kb on + strand, within IAI46_01130at 250.920 kb on - strand, within IAI46_01130at 250.920 kb on - strand, within IAI46_01130at 250.920 kb on - strand, within IAI46_01130at 251.336 kb on + strand, within IAI46_01130at 251.406 kb on + strand, within IAI46_01130at 251.406 kb on + strand, within IAI46_01130at 251.439 kb on - strand, within IAI46_01130at 251.527 kb on + strand, within IAI46_01130at 251.527 kb on + strand, within IAI46_01130at 251.528 kb on - strand, within IAI46_01130at 251.617 kb on + strand, within IAI46_01130at 251.618 kb on - strand, within IAI46_01130at 251.624 kb on - strand, within IAI46_01130at 251.744 kb on + strand, within IAI46_01130at 251.744 kb on + strand, within IAI46_01130at 251.803 kb on - strand, within IAI46_01130at 251.851 kb on + strand, within IAI46_01130at 251.852 kb on - strand, within IAI46_01130at 251.852 kb on - strand, within IAI46_01130at 251.886 kb on + strandat 252.055 kb on + strandat 252.055 kb on + strandat 252.056 kb on - strandat 252.071 kb on + strandat 252.071 kb on + strandat 252.072 kb on - strandat 252.082 kb on + strandat 252.082 kb on + strandat 252.083 kb on - strandat 252.083 kb on - strandat 252.157 kb on + strandat 252.224 kb on + strandat 252.270 kb on + strandat 252.270 kb on + strandat 252.270 kb on + strandat 252.270 kb on + strandat 252.271 kb on - strandat 252.271 kb on - strandat 252.325 kb on + strandat 252.326 kb on - strandat 252.420 kb on + strandat 252.420 kb on + strandat 252.481 kb on + strand, within IAI46_01135at 252.494 kb on - strand, within IAI46_01135at 252.590 kb on + strand, within IAI46_01135at 252.591 kb on - strand, within IAI46_01135at 252.638 kb on - strand, within IAI46_01135at 252.699 kb on - strand, within IAI46_01135at 252.699 kb on - strand, within IAI46_01135at 252.699 kb on - strand, within IAI46_01135at 252.699 kb on - strand, within IAI46_01135at 252.699 kb on - strand, within IAI46_01135at 252.711 kb on - strand, within IAI46_01135at 252.814 kb on - strand, within IAI46_01135at 252.838 kb on + strand, within IAI46_01135at 252.838 kb on + strand, within IAI46_01135at 252.839 kb on - strand, within IAI46_01135at 252.875 kb on + strand, within IAI46_01135at 252.875 kb on + strand, within IAI46_01135at 252.876 kb on - strand, within IAI46_01135at 252.940 kb on - strand, within IAI46_01135at 252.995 kb on - strand, within IAI46_01135at 252.995 kb on - strand, within IAI46_01135at 253.004 kb on + strand, within IAI46_01135at 253.004 kb on + strand, within IAI46_01135at 253.007 kb on + strand, within IAI46_01135at 253.007 kb on + strand, within IAI46_01135at 253.008 kb on - strand, within IAI46_01135at 253.008 kb on - strand, within IAI46_01135at 253.008 kb on - strand, within IAI46_01135at 253.008 kb on - strand, within IAI46_01135at 253.038 kb on - strand, within IAI46_01135at 253.040 kb on + strand, within IAI46_01135at 253.040 kb on + strand, within IAI46_01135at 253.040 kb on + strand, within IAI46_01135at 253.040 kb on + strand, within IAI46_01135at 253.041 kb on - strand, within IAI46_01135at 253.041 kb on - strand, within IAI46_01135

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, anaerobic
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248,908 - IAI46_01125 0.17 -0.5
248,908 - IAI46_01125 0.17 -0.6
249,268 + IAI46_01125 0.48 -0.0
249,268 + IAI46_01125 0.48 +0.6
249,269 - IAI46_01125 0.48 +0.2
249,329 - IAI46_01125 0.53 +0.4
249,401 + IAI46_01125 0.59 -0.3
249,401 + IAI46_01125 0.59 -0.1
249,401 + IAI46_01125 0.59 +0.1
249,402 - IAI46_01125 0.59 -0.1
249,402 - IAI46_01125 0.59 +1.2
249,408 + IAI46_01125 0.60 -0.7
249,408 + IAI46_01125 0.60 -0.8
249,408 + IAI46_01125 0.60 -0.6
249,409 - IAI46_01125 0.60 +0.2
249,409 - IAI46_01125 0.60 -0.3
249,518 + IAI46_01125 0.69 +0.5
249,518 + IAI46_01125 0.69 -0.3
249,518 + IAI46_01125 0.69 +0.1
249,518 + IAI46_01125 0.69 -0.4
249,519 - IAI46_01125 0.69 +0.6
249,519 - IAI46_01125 0.69 -0.2
249,680 + IAI46_01125 0.83 -0.2
249,681 - IAI46_01125 0.83 +1.0
249,718 + IAI46_01125 0.86 -0.9
249,849 + -0.2
249,850 - -1.3
249,863 + -2.3
249,864 - -0.4
249,864 - +0.7
249,868 - +0.5
249,868 - +0.4
249,882 + -0.6
249,883 - +0.2
249,942 - +0.2
249,942 - +0.5
249,942 - +1.9
249,951 + +0.3
249,952 - +0.4
249,990 - +0.4
249,990 - -0.1
250,031 + +0.4
250,032 - -2.0
250,059 - -0.2
250,067 - -0.2
250,067 - +0.1
250,305 - IAI46_01130 0.19 +0.5
250,348 - IAI46_01130 0.21 +0.5
250,365 + IAI46_01130 0.22 -0.6
250,390 - IAI46_01130 0.23 +0.1
250,464 - IAI46_01130 0.26 +0.9
250,548 + IAI46_01130 0.30 -0.1
250,623 + IAI46_01130 0.34 -0.4
250,624 - IAI46_01130 0.34 +1.2
250,640 + IAI46_01130 0.34 -0.4
250,641 - IAI46_01130 0.34 +0.4
250,659 + IAI46_01130 0.35 -0.3
250,659 + IAI46_01130 0.35 -0.2
250,659 + IAI46_01130 0.35 +0.0
250,660 - IAI46_01130 0.35 +0.4
250,660 - IAI46_01130 0.35 +0.4
250,660 - IAI46_01130 0.35 +1.6
250,696 + IAI46_01130 0.37 -0.8
250,714 + IAI46_01130 0.38 -0.5
250,797 + IAI46_01130 0.41 -0.7
250,797 + IAI46_01130 0.41 +0.2
250,797 + IAI46_01130 0.41 +0.1
250,798 - IAI46_01130 0.42 -0.7
250,919 + IAI46_01130 0.47 +0.1
250,919 + IAI46_01130 0.47 +0.5
250,920 - IAI46_01130 0.47 +0.4
250,920 - IAI46_01130 0.47 -0.2
250,920 - IAI46_01130 0.47 +0.2
251,336 + IAI46_01130 0.66 -0.9
251,406 + IAI46_01130 0.69 +0.0
251,406 + IAI46_01130 0.69 +0.1
251,439 - IAI46_01130 0.71 -0.4
251,527 + IAI46_01130 0.75 +0.1
251,527 + IAI46_01130 0.75 +0.3
251,528 - IAI46_01130 0.75 +0.5
251,617 + IAI46_01130 0.79 +0.7
251,618 - IAI46_01130 0.79 +0.3
251,624 - IAI46_01130 0.79 -0.3
251,744 + IAI46_01130 0.85 +1.0
251,744 + IAI46_01130 0.85 -0.2
251,803 - IAI46_01130 0.87 -1.6
251,851 + IAI46_01130 0.90 +0.4
251,852 - IAI46_01130 0.90 -0.2
251,852 - IAI46_01130 0.90 -1.0
251,886 + -0.3
252,055 + +0.1
252,055 + -0.3
252,056 - -0.1
252,071 + +0.2
252,071 + +0.2
252,072 - -0.0
252,082 + +2.4
252,082 + +0.2
252,083 - -0.6
252,083 - -0.1
252,157 + -0.0
252,224 + -0.9
252,270 + +0.8
252,270 + -0.0
252,270 + +0.1
252,270 + -0.2
252,271 - +0.2
252,271 - -0.5
252,325 + -0.3
252,326 - -0.3
252,420 + -1.3
252,420 + -0.5
252,481 + IAI46_01135 0.14 +0.4
252,494 - IAI46_01135 0.15 -0.6
252,590 + IAI46_01135 0.23 +0.3
252,591 - IAI46_01135 0.23 -0.2
252,638 - IAI46_01135 0.27 -0.2
252,699 - IAI46_01135 0.32 -2.4
252,699 - IAI46_01135 0.32 +0.4
252,699 - IAI46_01135 0.32 +0.7
252,699 - IAI46_01135 0.32 -0.1
252,699 - IAI46_01135 0.32 -0.3
252,711 - IAI46_01135 0.33 -0.0
252,814 - IAI46_01135 0.42 +0.3
252,838 + IAI46_01135 0.44 -0.4
252,838 + IAI46_01135 0.44 -0.7
252,839 - IAI46_01135 0.44 +1.0
252,875 + IAI46_01135 0.47 +0.2
252,875 + IAI46_01135 0.47 -0.1
252,876 - IAI46_01135 0.47 +0.3
252,940 - IAI46_01135 0.52 +0.2
252,995 - IAI46_01135 0.57 -0.2
252,995 - IAI46_01135 0.57 +0.1
253,004 + IAI46_01135 0.58 -2.0
253,004 + IAI46_01135 0.58 -0.2
253,007 + IAI46_01135 0.58 -0.3
253,007 + IAI46_01135 0.58 -1.2
253,008 - IAI46_01135 0.58 -1.0
253,008 - IAI46_01135 0.58 -0.5
253,008 - IAI46_01135 0.58 -0.3
253,008 - IAI46_01135 0.58 -0.0
253,038 - IAI46_01135 0.61 +0.7
253,040 + IAI46_01135 0.61 -2.1
253,040 + IAI46_01135 0.61 +0.1
253,040 + IAI46_01135 0.61 +0.1
253,040 + IAI46_01135 0.61 -0.0
253,041 - IAI46_01135 0.61 -0.1
253,041 - IAI46_01135 0.61 -1.3

Or see this region's nucleotide sequence