Experiment: Nickel (II) chloride 80 uM, anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_00065 and IAI46_00070 are separated by 134 nucleotides IAI46_00070 and IAI46_00075 are separated by 186 nucleotides IAI46_00075 and IAI46_00080 overlap by 11 nucleotides IAI46_00080 and IAI46_00085 are separated by 47 nucleotides
IAI46_00065: IAI46_00065 - valine--pyruvate transaminase, at 14,084 to 15,337
_00065
IAI46_00070: IAI46_00070 - alpha-amylase, at 15,472 to 17,541
_00070
IAI46_00075: IAI46_00075 - ribbon-helix-helix protein, CopG family, at 17,728 to 17,976
_00075
IAI46_00080: IAI46_00080 - type II toxin-antitoxin system RelE/ParE family toxin, at 17,966 to 18,253
_00080
IAI46_00085: IAI46_00085 - glyoxylate/hydroxypyruvate reductase GhrB, at 18,301 to 19,275
_00085
Position (kb) 15
16
17
18 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 14.509 kb on + strand, within IAI46_00065 at 14.510 kb on - strand, within IAI46_00065 at 14.614 kb on + strand, within IAI46_00065 at 14.638 kb on + strand, within IAI46_00065 at 14.638 kb on + strand, within IAI46_00065 at 14.639 kb on - strand, within IAI46_00065 at 14.654 kb on - strand, within IAI46_00065 at 14.654 kb on - strand, within IAI46_00065 at 14.676 kb on + strand, within IAI46_00065 at 14.753 kb on + strand, within IAI46_00065 at 14.753 kb on + strand, within IAI46_00065 at 14.753 kb on + strand, within IAI46_00065 at 14.754 kb on - strand, within IAI46_00065 at 14.754 kb on - strand, within IAI46_00065 at 14.813 kb on - strand, within IAI46_00065 at 14.838 kb on + strand, within IAI46_00065 at 14.839 kb on - strand, within IAI46_00065 at 14.839 kb on - strand, within IAI46_00065 at 14.927 kb on - strand, within IAI46_00065 at 14.927 kb on - strand, within IAI46_00065 at 14.928 kb on + strand, within IAI46_00065 at 14.928 kb on + strand, within IAI46_00065 at 14.929 kb on - strand, within IAI46_00065 at 14.929 kb on - strand, within IAI46_00065 at 14.977 kb on - strand, within IAI46_00065 at 14.977 kb on - strand, within IAI46_00065 at 14.995 kb on + strand, within IAI46_00065 at 15.129 kb on + strand, within IAI46_00065 at 15.129 kb on + strand, within IAI46_00065 at 15.129 kb on + strand, within IAI46_00065 at 15.129 kb on + strand, within IAI46_00065 at 15.129 kb on + strand, within IAI46_00065 at 15.130 kb on - strand, within IAI46_00065 at 15.130 kb on - strand, within IAI46_00065 at 15.130 kb on - strand, within IAI46_00065 at 15.130 kb on - strand, within IAI46_00065 at 15.133 kb on + strand, within IAI46_00065 at 15.133 kb on + strand, within IAI46_00065 at 15.134 kb on - strand, within IAI46_00065 at 15.134 kb on - strand, within IAI46_00065 at 15.134 kb on - strand, within IAI46_00065 at 15.134 kb on - strand, within IAI46_00065 at 15.234 kb on - strand at 15.234 kb on - strand at 15.234 kb on - strand at 15.282 kb on - strand at 15.289 kb on + strand at 15.349 kb on + strand at 15.350 kb on - strand at 15.365 kb on + strand at 15.365 kb on + strand at 15.366 kb on - strand at 15.366 kb on - strand at 15.412 kb on + strand at 15.412 kb on + strand at 15.431 kb on - strand at 15.453 kb on - strand at 15.460 kb on + strand at 15.460 kb on + strand at 15.460 kb on + strand at 15.460 kb on + strand at 15.460 kb on + strand at 15.460 kb on + strand at 15.460 kb on + strand at 15.460 kb on + strand at 15.460 kb on + strand at 15.461 kb on - strand at 15.461 kb on - strand at 15.461 kb on - strand at 15.473 kb on + strand at 15.473 kb on + strand at 15.539 kb on + strand at 15.540 kb on - strand at 15.540 kb on - strand at 15.540 kb on - strand at 15.540 kb on - strand at 15.540 kb on - strand at 15.540 kb on - strand at 15.542 kb on + strand at 15.542 kb on + strand at 15.542 kb on + strand at 15.543 kb on - strand at 15.543 kb on - strand at 15.543 kb on - strand at 15.670 kb on - strand at 15.713 kb on - strand, within IAI46_00070 at 15.713 kb on - strand, within IAI46_00070 at 15.738 kb on - strand, within IAI46_00070 at 15.740 kb on + strand, within IAI46_00070 at 15.854 kb on + strand, within IAI46_00070 at 15.854 kb on + strand, within IAI46_00070 at 15.854 kb on + strand, within IAI46_00070 at 15.854 kb on + strand, within IAI46_00070 at 15.854 kb on + strand, within IAI46_00070 at 15.854 kb on + strand, within IAI46_00070 at 15.855 kb on - strand, within IAI46_00070 at 15.855 kb on - strand, within IAI46_00070 at 15.989 kb on + strand, within IAI46_00070 at 15.990 kb on - strand, within IAI46_00070 at 15.990 kb on - strand, within IAI46_00070 at 15.990 kb on - strand, within IAI46_00070 at 15.992 kb on + strand, within IAI46_00070 at 15.992 kb on + strand, within IAI46_00070 at 15.992 kb on + strand, within IAI46_00070 at 15.993 kb on - strand, within IAI46_00070 at 15.993 kb on - strand, within IAI46_00070 at 16.139 kb on - strand, within IAI46_00070 at 16.178 kb on + strand, within IAI46_00070 at 16.186 kb on + strand, within IAI46_00070 at 16.187 kb on - strand, within IAI46_00070 at 16.264 kb on - strand, within IAI46_00070 at 16.351 kb on - strand, within IAI46_00070 at 16.353 kb on - strand, within IAI46_00070 at 16.353 kb on - strand, within IAI46_00070 at 16.367 kb on + strand, within IAI46_00070 at 16.368 kb on - strand, within IAI46_00070 at 16.442 kb on + strand, within IAI46_00070 at 16.442 kb on + strand, within IAI46_00070 at 16.443 kb on - strand, within IAI46_00070 at 16.501 kb on - strand, within IAI46_00070 at 16.535 kb on + strand, within IAI46_00070 at 16.536 kb on - strand, within IAI46_00070 at 16.537 kb on + strand, within IAI46_00070 at 16.537 kb on + strand, within IAI46_00070 at 16.538 kb on - strand, within IAI46_00070 at 16.563 kb on + strand, within IAI46_00070 at 16.563 kb on + strand, within IAI46_00070 at 16.564 kb on - strand, within IAI46_00070 at 16.564 kb on - strand, within IAI46_00070 at 16.564 kb on - strand, within IAI46_00070 at 16.580 kb on + strand, within IAI46_00070 at 16.598 kb on - strand, within IAI46_00070 at 16.598 kb on - strand, within IAI46_00070 at 16.598 kb on - strand, within IAI46_00070 at 16.706 kb on + strand, within IAI46_00070 at 16.706 kb on + strand, within IAI46_00070 at 16.707 kb on - strand, within IAI46_00070 at 16.719 kb on - strand, within IAI46_00070 at 16.719 kb on - strand, within IAI46_00070 at 16.719 kb on - strand, within IAI46_00070 at 16.724 kb on + strand, within IAI46_00070 at 16.724 kb on + strand, within IAI46_00070 at 16.724 kb on + strand, within IAI46_00070 at 16.824 kb on - strand, within IAI46_00070 at 16.904 kb on + strand, within IAI46_00070 at 16.905 kb on - strand, within IAI46_00070 at 16.905 kb on - strand, within IAI46_00070 at 16.958 kb on + strand, within IAI46_00070 at 17.093 kb on + strand, within IAI46_00070 at 17.094 kb on - strand, within IAI46_00070 at 17.227 kb on + strand, within IAI46_00070 at 17.228 kb on - strand, within IAI46_00070 at 17.228 kb on - strand, within IAI46_00070 at 17.228 kb on - strand, within IAI46_00070 at 17.384 kb on + strand at 17.551 kb on + strand at 17.552 kb on - strand at 17.578 kb on + strand at 17.613 kb on + strand at 17.691 kb on + strand at 17.696 kb on + strand at 17.696 kb on + strand at 17.696 kb on + strand at 17.697 kb on - strand at 17.697 kb on - strand at 17.703 kb on + strand at 17.703 kb on + strand at 17.704 kb on - strand at 17.704 kb on - strand at 17.704 kb on - strand at 17.705 kb on + strand at 17.705 kb on + strand at 17.728 kb on - strand at 17.728 kb on - strand at 17.728 kb on - strand at 17.728 kb on - strand at 17.982 kb on + strand at 17.983 kb on - strand at 18.014 kb on + strand, within IAI46_00080 at 18.015 kb on - strand, within IAI46_00080 at 18.015 kb on - strand, within IAI46_00080 at 18.078 kb on + strand, within IAI46_00080 at 18.165 kb on - strand, within IAI46_00080 at 18.177 kb on - strand, within IAI46_00080 at 18.198 kb on + strand, within IAI46_00080 at 18.198 kb on + strand, within IAI46_00080 at 18.198 kb on + strand, within IAI46_00080 at 18.198 kb on + strand, within IAI46_00080 at 18.198 kb on + strand, within IAI46_00080 at 18.198 kb on + strand, within IAI46_00080 at 18.199 kb on - strand, within IAI46_00080 at 18.199 kb on - strand, within IAI46_00080 at 18.199 kb on - strand, within IAI46_00080 at 18.203 kb on - strand, within IAI46_00080 at 18.220 kb on + strand, within IAI46_00080 at 18.281 kb on - strand at 18.281 kb on - strand at 18.299 kb on + strand at 18.299 kb on + strand at 18.299 kb on + strand at 18.302 kb on + strand at 18.302 kb on + strand at 18.302 kb on + strand at 18.434 kb on - strand, within IAI46_00085 at 18.436 kb on + strand, within IAI46_00085 at 18.437 kb on - strand, within IAI46_00085 at 18.467 kb on - strand, within IAI46_00085 at 18.513 kb on + strand, within IAI46_00085 at 18.513 kb on + strand, within IAI46_00085 at 18.513 kb on + strand, within IAI46_00085 at 18.514 kb on - strand, within IAI46_00085 at 18.514 kb on - strand, within IAI46_00085 at 18.514 kb on - strand, within IAI46_00085 at 18.514 kb on - strand, within IAI46_00085 at 18.514 kb on - strand, within IAI46_00085
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, anaerobic remove 14,509 + IAI46_00065 0.34 -0.7 14,510 - IAI46_00065 0.34 +0.4 14,614 + IAI46_00065 0.42 -0.2 14,638 + IAI46_00065 0.44 +1.0 14,638 + IAI46_00065 0.44 -0.4 14,639 - IAI46_00065 0.44 -0.5 14,654 - IAI46_00065 0.45 +0.0 14,654 - IAI46_00065 0.45 -1.1 14,676 + IAI46_00065 0.47 +1.6 14,753 + IAI46_00065 0.53 -1.2 14,753 + IAI46_00065 0.53 +0.9 14,753 + IAI46_00065 0.53 +0.4 14,754 - IAI46_00065 0.53 -0.1 14,754 - IAI46_00065 0.53 -0.8 14,813 - IAI46_00065 0.58 +0.1 14,838 + IAI46_00065 0.60 -0.4 14,839 - IAI46_00065 0.60 -0.2 14,839 - IAI46_00065 0.60 -0.0 14,927 - IAI46_00065 0.67 +0.1 14,927 - IAI46_00065 0.67 -0.3 14,928 + IAI46_00065 0.67 -0.7 14,928 + IAI46_00065 0.67 +0.0 14,929 - IAI46_00065 0.67 +1.7 14,929 - IAI46_00065 0.67 -0.6 14,977 - IAI46_00065 0.71 -0.5 14,977 - IAI46_00065 0.71 -0.3 14,995 + IAI46_00065 0.73 +0.5 15,129 + IAI46_00065 0.83 -0.6 15,129 + IAI46_00065 0.83 +0.3 15,129 + IAI46_00065 0.83 +0.5 15,129 + IAI46_00065 0.83 +0.4 15,129 + IAI46_00065 0.83 -0.6 15,130 - IAI46_00065 0.83 -1.6 15,130 - IAI46_00065 0.83 +0.2 15,130 - IAI46_00065 0.83 +0.4 15,130 - IAI46_00065 0.83 -0.6 15,133 + IAI46_00065 0.84 +0.2 15,133 + IAI46_00065 0.84 -0.1 15,134 - IAI46_00065 0.84 +0.3 15,134 - IAI46_00065 0.84 +1.7 15,134 - IAI46_00065 0.84 -0.1 15,134 - IAI46_00065 0.84 +0.9 15,234 - +1.4 15,234 - +0.1 15,234 - -0.3 15,282 - -0.2 15,289 + +0.1 15,349 + -2.3 15,350 - -0.7 15,365 + +0.4 15,365 + -0.5 15,366 - -1.0 15,366 - -0.1 15,412 + +0.4 15,412 + -0.1 15,431 - -0.2 15,453 - +0.7 15,460 + +0.1 15,460 + +0.2 15,460 + -0.7 15,460 + +0.8 15,460 + +0.1 15,460 + +0.6 15,460 + -0.0 15,460 + +2.1 15,460 + -0.9 15,461 - +0.6 15,461 - +0.2 15,461 - +0.2 15,473 + -0.2 15,473 + +1.4 15,539 + +0.3 15,540 - -0.8 15,540 - +0.1 15,540 - +0.5 15,540 - -0.7 15,540 - +0.0 15,540 - -0.1 15,542 + -0.6 15,542 + +0.3 15,542 + +0.7 15,543 - +0.3 15,543 - -0.6 15,543 - -1.2 15,670 - -0.4 15,713 - IAI46_00070 0.12 -0.2 15,713 - IAI46_00070 0.12 +0.1 15,738 - IAI46_00070 0.13 +0.7 15,740 + IAI46_00070 0.13 +0.1 15,854 + IAI46_00070 0.18 -0.5 15,854 + IAI46_00070 0.18 +0.2 15,854 + IAI46_00070 0.18 -0.6 15,854 + IAI46_00070 0.18 +0.1 15,854 + IAI46_00070 0.18 +0.0 15,854 + IAI46_00070 0.18 +0.3 15,855 - IAI46_00070 0.19 +0.2 15,855 - IAI46_00070 0.19 -0.0 15,989 + IAI46_00070 0.25 -0.2 15,990 - IAI46_00070 0.25 -1.1 15,990 - IAI46_00070 0.25 +0.3 15,990 - IAI46_00070 0.25 -0.3 15,992 + IAI46_00070 0.25 +1.2 15,992 + IAI46_00070 0.25 -0.0 15,992 + IAI46_00070 0.25 +0.6 15,993 - IAI46_00070 0.25 +0.1 15,993 - IAI46_00070 0.25 +0.4 16,139 - IAI46_00070 0.32 +1.2 16,178 + IAI46_00070 0.34 +0.4 16,186 + IAI46_00070 0.34 -0.1 16,187 - IAI46_00070 0.35 +0.2 16,264 - IAI46_00070 0.38 +0.3 16,351 - IAI46_00070 0.42 -0.3 16,353 - IAI46_00070 0.43 +0.3 16,353 - IAI46_00070 0.43 -0.1 16,367 + IAI46_00070 0.43 +0.0 16,368 - IAI46_00070 0.43 -0.9 16,442 + IAI46_00070 0.47 +0.6 16,442 + IAI46_00070 0.47 -0.4 16,443 - IAI46_00070 0.47 +0.8 16,501 - IAI46_00070 0.50 +0.0 16,535 + IAI46_00070 0.51 -0.6 16,536 - IAI46_00070 0.51 +0.2 16,537 + IAI46_00070 0.51 +0.4 16,537 + IAI46_00070 0.51 -0.4 16,538 - IAI46_00070 0.51 +0.1 16,563 + IAI46_00070 0.53 +0.4 16,563 + IAI46_00070 0.53 +1.0 16,564 - IAI46_00070 0.53 -0.7 16,564 - IAI46_00070 0.53 +0.5 16,564 - IAI46_00070 0.53 +0.4 16,580 + IAI46_00070 0.54 -0.2 16,598 - IAI46_00070 0.54 +0.7 16,598 - IAI46_00070 0.54 +0.2 16,598 - IAI46_00070 0.54 +0.1 16,706 + IAI46_00070 0.60 +0.1 16,706 + IAI46_00070 0.60 -0.9 16,707 - IAI46_00070 0.60 -0.5 16,719 - IAI46_00070 0.60 +0.2 16,719 - IAI46_00070 0.60 +0.1 16,719 - IAI46_00070 0.60 -0.0 16,724 + IAI46_00070 0.60 -0.8 16,724 + IAI46_00070 0.60 -0.1 16,724 + IAI46_00070 0.60 -0.2 16,824 - IAI46_00070 0.65 -0.3 16,904 + IAI46_00070 0.69 +0.3 16,905 - IAI46_00070 0.69 +0.8 16,905 - IAI46_00070 0.69 -1.0 16,958 + IAI46_00070 0.72 +0.1 17,093 + IAI46_00070 0.78 +0.1 17,094 - IAI46_00070 0.78 -0.4 17,227 + IAI46_00070 0.85 +1.1 17,228 - IAI46_00070 0.85 +0.3 17,228 - IAI46_00070 0.85 +0.3 17,228 - IAI46_00070 0.85 +0.1 17,384 + +0.1 17,551 + +0.4 17,552 - -0.1 17,578 + +0.0 17,613 + -0.7 17,691 + -1.1 17,696 + -1.2 17,696 + -0.0 17,696 + +0.5 17,697 - +0.4 17,697 - +0.8 17,703 + -0.1 17,703 + -0.2 17,704 - -1.1 17,704 - -1.2 17,704 - +0.6 17,705 + +1.0 17,705 + -0.3 17,728 - +0.4 17,728 - -1.3 17,728 - +1.1 17,728 - -3.2 17,982 + +0.0 17,983 - +0.2 18,014 + IAI46_00080 0.17 +1.2 18,015 - IAI46_00080 0.17 -0.1 18,015 - IAI46_00080 0.17 -1.2 18,078 + IAI46_00080 0.39 -0.0 18,165 - IAI46_00080 0.69 -0.5 18,177 - IAI46_00080 0.73 -0.8 18,198 + IAI46_00080 0.81 -0.4 18,198 + IAI46_00080 0.81 -0.0 18,198 + IAI46_00080 0.81 +0.3 18,198 + IAI46_00080 0.81 -2.7 18,198 + IAI46_00080 0.81 +0.1 18,198 + IAI46_00080 0.81 +0.7 18,199 - IAI46_00080 0.81 -0.1 18,199 - IAI46_00080 0.81 -1.6 18,199 - IAI46_00080 0.81 +1.3 18,203 - IAI46_00080 0.82 -0.3 18,220 + IAI46_00080 0.88 -0.3 18,281 - +0.6 18,281 - -1.7 18,299 + -0.0 18,299 + -0.6 18,299 + +0.4 18,302 + -0.0 18,302 + +0.3 18,302 + +0.0 18,434 - IAI46_00085 0.14 +1.3 18,436 + IAI46_00085 0.14 -0.9 18,437 - IAI46_00085 0.14 +0.5 18,467 - IAI46_00085 0.17 -0.1 18,513 + IAI46_00085 0.22 -0.3 18,513 + IAI46_00085 0.22 +1.0 18,513 + IAI46_00085 0.22 +0.2 18,514 - IAI46_00085 0.22 +0.4 18,514 - IAI46_00085 0.22 -1.7 18,514 - IAI46_00085 0.22 -0.0 18,514 - IAI46_00085 0.22 +0.4 18,514 - IAI46_00085 0.22 +0.5
Or see this region's nucleotide sequence