Experiment: m.b. Polymyxin B sulfate 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_4631 and Echvi_4632 are separated by 285 nucleotides Echvi_4632 and Echvi_4633 are separated by 127 nucleotides
Echvi_4631: Echvi_4631 - (p)ppGpp synthetase, RelA/SpoT family, at 5,540,233 to 5,542,455
_4631
Echvi_4632: Echvi_4632 - tRNA, at 5,542,741 to 5,542,825
_4632
Echvi_4633: Echvi_4633 - trigger factor, at 5,542,953 to 5,544,281
_4633
Position (kb) 5542
5543 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5541.769 kb on - strand, within Echvi_4631 at 5541.792 kb on + strand, within Echvi_4631 at 5541.792 kb on + strand, within Echvi_4631 at 5541.817 kb on - strand, within Echvi_4631 at 5541.833 kb on + strand, within Echvi_4631 at 5541.888 kb on + strand, within Echvi_4631 at 5541.888 kb on + strand, within Echvi_4631 at 5541.888 kb on + strand, within Echvi_4631 at 5541.890 kb on + strand, within Echvi_4631 at 5541.890 kb on + strand, within Echvi_4631 at 5541.891 kb on - strand, within Echvi_4631 at 5541.891 kb on - strand, within Echvi_4631 at 5541.920 kb on + strand, within Echvi_4631 at 5541.926 kb on + strand, within Echvi_4631 at 5541.926 kb on + strand, within Echvi_4631 at 5541.926 kb on + strand, within Echvi_4631 at 5541.926 kb on + strand, within Echvi_4631 at 5541.927 kb on - strand, within Echvi_4631 at 5541.927 kb on - strand, within Echvi_4631 at 5541.958 kb on - strand, within Echvi_4631 at 5542.182 kb on + strand, within Echvi_4631 at 5542.224 kb on + strand, within Echvi_4631 at 5542.224 kb on + strand, within Echvi_4631 at 5542.227 kb on + strand, within Echvi_4631 at 5542.228 kb on - strand at 5542.277 kb on + strand at 5542.277 kb on + strand at 5542.281 kb on + strand at 5542.281 kb on + strand at 5542.283 kb on + strand at 5542.283 kb on + strand at 5542.284 kb on - strand at 5542.432 kb on + strand at 5542.432 kb on + strand at 5542.444 kb on + strand at 5542.455 kb on + strand at 5542.455 kb on + strand at 5542.461 kb on + strand at 5542.461 kb on + strand at 5542.462 kb on - strand at 5542.462 kb on - strand at 5542.462 kb on - strand at 5542.464 kb on + strand at 5542.465 kb on - strand at 5542.504 kb on - strand at 5542.507 kb on + strand at 5542.507 kb on + strand at 5542.507 kb on + strand at 5542.508 kb on - strand at 5542.825 kb on - strand at 5542.874 kb on + strand at 5542.875 kb on - strand at 5542.966 kb on + strand at 5543.022 kb on + strand at 5543.022 kb on + strand at 5543.056 kb on - strand at 5543.184 kb on + strand, within Echvi_4633 at 5543.185 kb on - strand, within Echvi_4633 at 5543.186 kb on + strand, within Echvi_4633 at 5543.187 kb on - strand, within Echvi_4633 at 5543.249 kb on + strand, within Echvi_4633 at 5543.250 kb on - strand, within Echvi_4633 at 5543.288 kb on + strand, within Echvi_4633 at 5543.288 kb on + strand, within Echvi_4633 at 5543.289 kb on - strand, within Echvi_4633 at 5543.293 kb on + strand, within Echvi_4633 at 5543.294 kb on - strand, within Echvi_4633 at 5543.399 kb on - strand, within Echvi_4633 at 5543.434 kb on + strand, within Echvi_4633 at 5543.435 kb on - strand, within Echvi_4633 at 5543.435 kb on - strand, within Echvi_4633 at 5543.705 kb on + strand, within Echvi_4633 at 5543.807 kb on + strand, within Echvi_4633
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Polymyxin B sulfate 1 mg/ml remove 5,541,769 - Echvi_4631 0.69 +2.3 5,541,792 + Echvi_4631 0.70 +1.7 5,541,792 + Echvi_4631 0.70 +1.7 5,541,817 - Echvi_4631 0.71 +1.2 5,541,833 + Echvi_4631 0.72 +2.3 5,541,888 + Echvi_4631 0.74 +2.1 5,541,888 + Echvi_4631 0.74 +2.4 5,541,888 + Echvi_4631 0.74 +1.9 5,541,890 + Echvi_4631 0.75 +1.0 5,541,890 + Echvi_4631 0.75 +0.9 5,541,891 - Echvi_4631 0.75 +2.3 5,541,891 - Echvi_4631 0.75 +1.3 5,541,920 + Echvi_4631 0.76 +1.6 5,541,926 + Echvi_4631 0.76 +2.3 5,541,926 + Echvi_4631 0.76 +2.4 5,541,926 + Echvi_4631 0.76 +1.3 5,541,926 + Echvi_4631 0.76 +2.3 5,541,927 - Echvi_4631 0.76 +1.6 5,541,927 - Echvi_4631 0.76 +2.3 5,541,958 - Echvi_4631 0.78 -0.7 5,542,182 + Echvi_4631 0.88 +1.3 5,542,224 + Echvi_4631 0.90 +0.6 5,542,224 + Echvi_4631 0.90 +1.0 5,542,227 + Echvi_4631 0.90 -1.4 5,542,228 - -0.4 5,542,277 + +1.7 5,542,277 + +1.1 5,542,281 + +0.5 5,542,281 + +0.9 5,542,283 + +0.9 5,542,283 + +1.3 5,542,284 - -1.0 5,542,432 + -1.4 5,542,432 + -0.0 5,542,444 + +0.5 5,542,455 + +0.4 5,542,455 + -0.1 5,542,461 + -0.4 5,542,461 + -1.2 5,542,462 - +1.0 5,542,462 - +0.1 5,542,462 - +0.2 5,542,464 + -0.4 5,542,465 - +0.3 5,542,504 - +1.3 5,542,507 + -0.5 5,542,507 + -1.1 5,542,507 + -0.1 5,542,508 - +0.8 5,542,825 - -0.3 5,542,874 + -0.1 5,542,875 - +2.1 5,542,966 + -0.3 5,543,022 + +0.2 5,543,022 + -0.2 5,543,056 - -0.6 5,543,184 + Echvi_4633 0.17 -3.1 5,543,185 - Echvi_4633 0.17 -0.5 5,543,186 + Echvi_4633 0.18 +0.9 5,543,187 - Echvi_4633 0.18 +0.4 5,543,249 + Echvi_4633 0.22 -2.8 5,543,250 - Echvi_4633 0.22 -0.5 5,543,288 + Echvi_4633 0.25 -2.2 5,543,288 + Echvi_4633 0.25 -1.8 5,543,289 - Echvi_4633 0.25 +0.5 5,543,293 + Echvi_4633 0.26 +0.3 5,543,294 - Echvi_4633 0.26 +2.0 5,543,399 - Echvi_4633 0.34 +0.3 5,543,434 + Echvi_4633 0.36 -0.7 5,543,435 - Echvi_4633 0.36 -1.6 5,543,435 - Echvi_4633 0.36 -0.2 5,543,705 + Echvi_4633 0.57 -1.1 5,543,807 + Echvi_4633 0.64 -0.8
Or see this region's nucleotide sequence