Experiment: M9 with sucrose and trichloroethylene 76.3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4307 and EX28DRAFT_4308 are separated by 71 nucleotides EX28DRAFT_4308 and EX28DRAFT_4309 are separated by 370 nucleotides
EX28DRAFT_4307: EX28DRAFT_4307 - Maltoporin (phage lambda and maltose receptor), at 110,268 to 111,581
_4307
EX28DRAFT_4308: EX28DRAFT_4308 - ABC-type sugar transport systems, ATPase components, at 111,653 to 112,762
_4308
EX28DRAFT_4309: EX28DRAFT_4309 - Maltose-binding periplasmic proteins/domains, at 113,133 to 114,323
_4309
Position (kb)
111
112
113 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 110.653 kb on + strand, within EX28DRAFT_4307 at 110.654 kb on - strand, within EX28DRAFT_4307 at 110.654 kb on - strand, within EX28DRAFT_4307 at 110.657 kb on + strand, within EX28DRAFT_4307 at 110.657 kb on + strand, within EX28DRAFT_4307 at 110.665 kb on + strand, within EX28DRAFT_4307 at 110.665 kb on + strand, within EX28DRAFT_4307 at 110.665 kb on + strand, within EX28DRAFT_4307 at 110.666 kb on - strand, within EX28DRAFT_4307 at 110.666 kb on - strand, within EX28DRAFT_4307 at 110.780 kb on + strand, within EX28DRAFT_4307 at 110.780 kb on + strand, within EX28DRAFT_4307 at 110.780 kb on + strand, within EX28DRAFT_4307 at 110.781 kb on - strand, within EX28DRAFT_4307 at 110.888 kb on - strand, within EX28DRAFT_4307 at 110.888 kb on - strand, within EX28DRAFT_4307 at 110.890 kb on + strand, within EX28DRAFT_4307 at 110.891 kb on - strand, within EX28DRAFT_4307 at 110.891 kb on - strand, within EX28DRAFT_4307 at 110.891 kb on - strand, within EX28DRAFT_4307 at 111.011 kb on + strand, within EX28DRAFT_4307 at 111.011 kb on + strand, within EX28DRAFT_4307 at 111.012 kb on - strand, within EX28DRAFT_4307 at 111.012 kb on - strand, within EX28DRAFT_4307 at 111.012 kb on - strand, within EX28DRAFT_4307 at 111.149 kb on - strand, within EX28DRAFT_4307 at 111.152 kb on - strand, within EX28DRAFT_4307 at 111.307 kb on + strand, within EX28DRAFT_4307 at 111.329 kb on - strand, within EX28DRAFT_4307 at 111.383 kb on - strand, within EX28DRAFT_4307 at 111.409 kb on + strand, within EX28DRAFT_4307 at 111.410 kb on - strand, within EX28DRAFT_4307 at 111.410 kb on - strand, within EX28DRAFT_4307 at 111.488 kb on - strand at 111.584 kb on + strand at 111.585 kb on - strand at 111.655 kb on - strand at 111.671 kb on - strand at 111.671 kb on - strand at 111.758 kb on + strand at 111.759 kb on - strand at 111.818 kb on - strand, within EX28DRAFT_4308 at 111.945 kb on - strand, within EX28DRAFT_4308 at 112.001 kb on + strand, within EX28DRAFT_4308 at 112.063 kb on + strand, within EX28DRAFT_4308 at 112.063 kb on + strand, within EX28DRAFT_4308 at 112.063 kb on + strand, within EX28DRAFT_4308 at 112.099 kb on - strand, within EX28DRAFT_4308 at 112.198 kb on - strand, within EX28DRAFT_4308 at 112.400 kb on + strand, within EX28DRAFT_4308 at 112.477 kb on + strand, within EX28DRAFT_4308 at 112.477 kb on + strand, within EX28DRAFT_4308 at 112.477 kb on + strand, within EX28DRAFT_4308 at 112.478 kb on - strand, within EX28DRAFT_4308 at 112.478 kb on - strand, within EX28DRAFT_4308 at 112.503 kb on + strand, within EX28DRAFT_4308 at 112.512 kb on + strand, within EX28DRAFT_4308 at 112.512 kb on + strand, within EX28DRAFT_4308 at 112.513 kb on - strand, within EX28DRAFT_4308 at 112.639 kb on + strand, within EX28DRAFT_4308 at 112.640 kb on - strand, within EX28DRAFT_4308 at 112.811 kb on - strand at 113.066 kb on - strand at 113.066 kb on - strand at 113.094 kb on + strand at 113.094 kb on + strand at 113.094 kb on + strand at 113.094 kb on + strand at 113.094 kb on + strand at 113.095 kb on - strand at 113.095 kb on - strand at 113.095 kb on - strand at 113.095 kb on - strand at 113.095 kb on - strand at 113.095 kb on - strand at 113.095 kb on - strand at 113.098 kb on + strand at 113.098 kb on + strand at 113.099 kb on - strand at 113.133 kb on - strand at 113.139 kb on - strand at 113.260 kb on - strand, within EX28DRAFT_4309 at 113.260 kb on - strand, within EX28DRAFT_4309 at 113.640 kb on - strand, within EX28DRAFT_4309 at 113.673 kb on + strand, within EX28DRAFT_4309 at 113.673 kb on + strand, within EX28DRAFT_4309 at 113.737 kb on - strand, within EX28DRAFT_4309
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM remove 110,653 + EX28DRAFT_4307 0.29 +0.3 110,654 - EX28DRAFT_4307 0.29 +1.2 110,654 - EX28DRAFT_4307 0.29 -3.1 110,657 + EX28DRAFT_4307 0.30 -0.1 110,657 + EX28DRAFT_4307 0.30 -1.8 110,665 + EX28DRAFT_4307 0.30 +0.2 110,665 + EX28DRAFT_4307 0.30 +0.0 110,665 + EX28DRAFT_4307 0.30 -0.1 110,666 - EX28DRAFT_4307 0.30 -2.3 110,666 - EX28DRAFT_4307 0.30 +0.1 110,780 + EX28DRAFT_4307 0.39 -0.1 110,780 + EX28DRAFT_4307 0.39 +0.8 110,780 + EX28DRAFT_4307 0.39 -0.4 110,781 - EX28DRAFT_4307 0.39 +0.4 110,888 - EX28DRAFT_4307 0.47 -1.0 110,888 - EX28DRAFT_4307 0.47 +0.5 110,890 + EX28DRAFT_4307 0.47 -3.9 110,891 - EX28DRAFT_4307 0.47 +0.4 110,891 - EX28DRAFT_4307 0.47 -2.2 110,891 - EX28DRAFT_4307 0.47 -0.6 111,011 + EX28DRAFT_4307 0.57 -1.3 111,011 + EX28DRAFT_4307 0.57 +1.2 111,012 - EX28DRAFT_4307 0.57 +1.4 111,012 - EX28DRAFT_4307 0.57 +0.7 111,012 - EX28DRAFT_4307 0.57 +0.8 111,149 - EX28DRAFT_4307 0.67 -0.9 111,152 - EX28DRAFT_4307 0.67 -0.4 111,307 + EX28DRAFT_4307 0.79 -4.5 111,329 - EX28DRAFT_4307 0.81 -1.1 111,383 - EX28DRAFT_4307 0.85 -2.3 111,409 + EX28DRAFT_4307 0.87 -0.7 111,410 - EX28DRAFT_4307 0.87 +0.1 111,410 - EX28DRAFT_4307 0.87 +0.7 111,488 - +0.1 111,584 + -1.1 111,585 - +0.1 111,655 - +0.7 111,671 - +0.5 111,671 - +0.1 111,758 + +1.1 111,759 - -1.4 111,818 - EX28DRAFT_4308 0.15 -1.8 111,945 - EX28DRAFT_4308 0.26 +0.5 112,001 + EX28DRAFT_4308 0.31 +0.9 112,063 + EX28DRAFT_4308 0.37 -0.6 112,063 + EX28DRAFT_4308 0.37 +0.4 112,063 + EX28DRAFT_4308 0.37 -0.2 112,099 - EX28DRAFT_4308 0.40 -0.5 112,198 - EX28DRAFT_4308 0.49 +0.5 112,400 + EX28DRAFT_4308 0.67 +0.0 112,477 + EX28DRAFT_4308 0.74 +0.2 112,477 + EX28DRAFT_4308 0.74 -0.8 112,477 + EX28DRAFT_4308 0.74 -0.4 112,478 - EX28DRAFT_4308 0.74 -1.2 112,478 - EX28DRAFT_4308 0.74 +0.3 112,503 + EX28DRAFT_4308 0.77 +1.3 112,512 + EX28DRAFT_4308 0.77 -1.2 112,512 + EX28DRAFT_4308 0.77 -0.4 112,513 - EX28DRAFT_4308 0.77 -0.7 112,639 + EX28DRAFT_4308 0.89 +1.1 112,640 - EX28DRAFT_4308 0.89 -0.7 112,811 - -0.5 113,066 - +0.1 113,066 - -1.1 113,094 + -0.5 113,094 + +0.4 113,094 + -0.5 113,094 + -2.9 113,094 + -0.0 113,095 - +1.2 113,095 - -0.2 113,095 - -1.4 113,095 - -0.5 113,095 - +0.1 113,095 - +0.7 113,095 - +2.5 113,098 + -1.8 113,098 + +0.1 113,099 - +0.3 113,133 - -2.9 113,139 - +0.7 113,260 - EX28DRAFT_4309 0.11 -0.7 113,260 - EX28DRAFT_4309 0.11 +0.3 113,640 - EX28DRAFT_4309 0.43 +0.5 113,673 + EX28DRAFT_4309 0.45 +0.9 113,673 + EX28DRAFT_4309 0.45 +0.8 113,737 - EX28DRAFT_4309 0.51 +0.5
Or see this region's nucleotide sequence