Experiment: M9 with sucrose and trichloroethylene 76.3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4286 and EX28DRAFT_4287 are separated by 1 nucleotides EX28DRAFT_4287 and EX28DRAFT_4288 overlap by 4 nucleotides EX28DRAFT_4288 and EX28DRAFT_4289 overlap by 4 nucleotides EX28DRAFT_4289 and EX28DRAFT_4290 are separated by 46 nucleotides
EX28DRAFT_4286: EX28DRAFT_4286 - ABC-type branched-chain amino acid transport systems, ATPase component, at 90,385 to 91,098
_4286
EX28DRAFT_4287: EX28DRAFT_4287 - ABC-type branched-chain amino acid transport systems, ATPase component, at 91,100 to 91,867
_4287
EX28DRAFT_4288: EX28DRAFT_4288 - ABC-type branched-chain amino acid transport system, permease component, at 91,864 to 93,141
_4288
EX28DRAFT_4289: EX28DRAFT_4289 - Branched-chain amino acid ABC-type transport system, permease components, at 93,138 to 94,064
_4289
EX28DRAFT_4290: EX28DRAFT_4290 - ABC-type branched-chain amino acid transport systems, periplasmic component, at 94,111 to 95,220
_4290
Position (kb)
91
92
93
94 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 90.901 kb on - strand, within EX28DRAFT_4286 at 91.102 kb on - strand at 91.102 kb on - strand at 91.194 kb on + strand, within EX28DRAFT_4287 at 91.194 kb on + strand, within EX28DRAFT_4287 at 91.194 kb on + strand, within EX28DRAFT_4287 at 91.194 kb on + strand, within EX28DRAFT_4287 at 91.195 kb on - strand, within EX28DRAFT_4287 at 91.199 kb on - strand, within EX28DRAFT_4287 at 91.704 kb on + strand, within EX28DRAFT_4287 at 91.853 kb on + strand at 91.853 kb on + strand at 91.988 kb on + strand at 92.348 kb on + strand, within EX28DRAFT_4288 at 92.349 kb on - strand, within EX28DRAFT_4288 at 92.378 kb on + strand, within EX28DRAFT_4288 at 92.378 kb on + strand, within EX28DRAFT_4288 at 92.378 kb on + strand, within EX28DRAFT_4288 at 92.378 kb on + strand, within EX28DRAFT_4288 at 92.379 kb on - strand, within EX28DRAFT_4288 at 92.663 kb on + strand, within EX28DRAFT_4288 at 92.664 kb on - strand, within EX28DRAFT_4288 at 92.666 kb on + strand, within EX28DRAFT_4288 at 92.688 kb on + strand, within EX28DRAFT_4288 at 92.705 kb on + strand, within EX28DRAFT_4288 at 92.780 kb on + strand, within EX28DRAFT_4288 at 92.780 kb on + strand, within EX28DRAFT_4288 at 92.887 kb on - strand, within EX28DRAFT_4288 at 92.998 kb on + strand, within EX28DRAFT_4288 at 93.141 kb on + strand at 93.227 kb on + strand at 93.228 kb on - strand at 93.228 kb on - strand at 93.230 kb on - strand at 93.244 kb on + strand, within EX28DRAFT_4289 at 93.367 kb on + strand, within EX28DRAFT_4289 at 93.454 kb on - strand, within EX28DRAFT_4289 at 93.569 kb on + strand, within EX28DRAFT_4289 at 93.570 kb on - strand, within EX28DRAFT_4289 at 93.570 kb on - strand, within EX28DRAFT_4289 at 93.704 kb on - strand, within EX28DRAFT_4289 at 93.899 kb on + strand, within EX28DRAFT_4289 at 93.910 kb on + strand, within EX28DRAFT_4289 at 93.910 kb on + strand, within EX28DRAFT_4289 at 93.911 kb on - strand, within EX28DRAFT_4289 at 93.911 kb on - strand, within EX28DRAFT_4289 at 93.915 kb on - strand, within EX28DRAFT_4289 at 93.925 kb on + strand, within EX28DRAFT_4289 at 93.925 kb on + strand, within EX28DRAFT_4289 at 93.925 kb on + strand, within EX28DRAFT_4289 at 93.925 kb on + strand, within EX28DRAFT_4289 at 93.925 kb on + strand, within EX28DRAFT_4289 at 93.925 kb on + strand, within EX28DRAFT_4289 at 93.925 kb on + strand, within EX28DRAFT_4289 at 93.926 kb on - strand, within EX28DRAFT_4289 at 93.926 kb on - strand, within EX28DRAFT_4289 at 93.926 kb on - strand, within EX28DRAFT_4289 at 93.926 kb on - strand, within EX28DRAFT_4289 at 93.926 kb on - strand, within EX28DRAFT_4289 at 93.927 kb on + strand, within EX28DRAFT_4289 at 93.927 kb on + strand, within EX28DRAFT_4289 at 93.927 kb on + strand, within EX28DRAFT_4289 at 93.927 kb on + strand, within EX28DRAFT_4289 at 93.977 kb on + strand at 93.977 kb on + strand at 93.977 kb on + strand at 93.978 kb on - strand at 94.001 kb on - strand at 94.045 kb on + strand at 94.064 kb on + strand at 94.079 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM remove 90,901 - EX28DRAFT_4286 0.72 +1.5 91,102 - -1.7 91,102 - -3.2 91,194 + EX28DRAFT_4287 0.12 -3.6 91,194 + EX28DRAFT_4287 0.12 -0.4 91,194 + EX28DRAFT_4287 0.12 +0.4 91,194 + EX28DRAFT_4287 0.12 -0.2 91,195 - EX28DRAFT_4287 0.12 -0.2 91,199 - EX28DRAFT_4287 0.13 -0.5 91,704 + EX28DRAFT_4287 0.79 -0.5 91,853 + -3.1 91,853 + -0.2 91,988 + +0.8 92,348 + EX28DRAFT_4288 0.38 +0.3 92,349 - EX28DRAFT_4288 0.38 +0.4 92,378 + EX28DRAFT_4288 0.40 +1.2 92,378 + EX28DRAFT_4288 0.40 -0.2 92,378 + EX28DRAFT_4288 0.40 +1.0 92,378 + EX28DRAFT_4288 0.40 +0.3 92,379 - EX28DRAFT_4288 0.40 +0.4 92,663 + EX28DRAFT_4288 0.63 +0.9 92,664 - EX28DRAFT_4288 0.63 +0.1 92,666 + EX28DRAFT_4288 0.63 -0.2 92,688 + EX28DRAFT_4288 0.64 +0.0 92,705 + EX28DRAFT_4288 0.66 +0.5 92,780 + EX28DRAFT_4288 0.72 +0.2 92,780 + EX28DRAFT_4288 0.72 +0.4 92,887 - EX28DRAFT_4288 0.80 +0.5 92,998 + EX28DRAFT_4288 0.89 -1.4 93,141 + -0.9 93,227 + +0.9 93,228 - -1.2 93,228 - +0.7 93,230 - -0.1 93,244 + EX28DRAFT_4289 0.11 -0.3 93,367 + EX28DRAFT_4289 0.25 +0.5 93,454 - EX28DRAFT_4289 0.34 -0.1 93,569 + EX28DRAFT_4289 0.46 -0.3 93,570 - EX28DRAFT_4289 0.47 -0.2 93,570 - EX28DRAFT_4289 0.47 -1.5 93,704 - EX28DRAFT_4289 0.61 +0.8 93,899 + EX28DRAFT_4289 0.82 +0.2 93,910 + EX28DRAFT_4289 0.83 +0.5 93,910 + EX28DRAFT_4289 0.83 -0.5 93,911 - EX28DRAFT_4289 0.83 +1.7 93,911 - EX28DRAFT_4289 0.83 -4.3 93,915 - EX28DRAFT_4289 0.84 -0.7 93,925 + EX28DRAFT_4289 0.85 +0.5 93,925 + EX28DRAFT_4289 0.85 -0.7 93,925 + EX28DRAFT_4289 0.85 +1.3 93,925 + EX28DRAFT_4289 0.85 -3.3 93,925 + EX28DRAFT_4289 0.85 +1.1 93,925 + EX28DRAFT_4289 0.85 -3.8 93,925 + EX28DRAFT_4289 0.85 -0.5 93,926 - EX28DRAFT_4289 0.85 -1.6 93,926 - EX28DRAFT_4289 0.85 -0.2 93,926 - EX28DRAFT_4289 0.85 +0.1 93,926 - EX28DRAFT_4289 0.85 -1.8 93,926 - EX28DRAFT_4289 0.85 +0.5 93,927 + EX28DRAFT_4289 0.85 -2.2 93,927 + EX28DRAFT_4289 0.85 +0.2 93,927 + EX28DRAFT_4289 0.85 -0.6 93,927 + EX28DRAFT_4289 0.85 +0.4 93,977 + +0.6 93,977 + +2.3 93,977 + +0.3 93,978 - -0.3 94,001 - +1.1 94,045 + +0.9 94,064 + -0.1 94,079 - -0.3
Or see this region's nucleotide sequence