Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4251

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4250 and EX28DRAFT_4251 are separated by 206 nucleotidesEX28DRAFT_4251 and EX28DRAFT_4252 are separated by 75 nucleotidesEX28DRAFT_4252 and EX28DRAFT_4253 overlap by 1 nucleotides EX28DRAFT_4250: EX28DRAFT_4250 - Aspartate/tyrosine/aromatic aminotransferase, at 57,225 to 58,418 _4250 EX28DRAFT_4251: EX28DRAFT_4251 - Protein of unknown function (DUF2589), at 58,625 to 59,182 _4251 EX28DRAFT_4252: EX28DRAFT_4252 - Protein of unknown function (DUF2589), at 59,258 to 59,860 _4252 EX28DRAFT_4253: EX28DRAFT_4253 - Phage-related lysozyme (muraminidase), at 59,860 to 60,309 _4253 Position (kb) 58 59 60Strain fitness (log2 ratio) -3 -2 -1 0 1at 57.775 kb on + strand, within EX28DRAFT_4250at 57.816 kb on + strand, within EX28DRAFT_4250at 57.817 kb on - strand, within EX28DRAFT_4250at 58.066 kb on + strand, within EX28DRAFT_4250at 58.067 kb on - strand, within EX28DRAFT_4250at 58.223 kb on - strand, within EX28DRAFT_4250at 58.293 kb on - strand, within EX28DRAFT_4250at 58.309 kb on + strandat 58.309 kb on + strandat 58.313 kb on - strandat 58.313 kb on - strandat 58.325 kb on + strandat 58.325 kb on + strandat 58.383 kb on - strandat 58.461 kb on + strandat 58.462 kb on - strandat 58.462 kb on - strandat 58.514 kb on - strandat 58.552 kb on - strandat 58.640 kb on - strandat 58.651 kb on + strandat 58.675 kb on + strandat 58.676 kb on - strandat 58.676 kb on - strandat 58.676 kb on - strandat 58.676 kb on - strandat 58.733 kb on + strand, within EX28DRAFT_4251at 58.831 kb on + strand, within EX28DRAFT_4251at 59.066 kb on - strand, within EX28DRAFT_4251at 59.089 kb on + strand, within EX28DRAFT_4251at 59.098 kb on + strand, within EX28DRAFT_4251at 59.141 kb on + strandat 59.141 kb on + strandat 59.141 kb on + strandat 59.142 kb on - strandat 59.200 kb on + strandat 59.200 kb on + strandat 59.200 kb on + strandat 59.201 kb on - strandat 59.408 kb on - strand, within EX28DRAFT_4252at 59.408 kb on - strand, within EX28DRAFT_4252at 59.426 kb on + strand, within EX28DRAFT_4252at 59.465 kb on + strand, within EX28DRAFT_4252at 59.465 kb on + strand, within EX28DRAFT_4252at 59.467 kb on + strand, within EX28DRAFT_4252at 59.467 kb on + strand, within EX28DRAFT_4252at 59.467 kb on + strand, within EX28DRAFT_4252at 59.467 kb on + strand, within EX28DRAFT_4252at 59.468 kb on - strand, within EX28DRAFT_4252at 59.814 kb on - strandat 59.880 kb on + strandat 59.881 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
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57,775 + EX28DRAFT_4250 0.46 +1.7
57,816 + EX28DRAFT_4250 0.49 +0.0
57,817 - EX28DRAFT_4250 0.50 -0.7
58,066 + EX28DRAFT_4250 0.70 +0.4
58,067 - EX28DRAFT_4250 0.71 -0.2
58,223 - EX28DRAFT_4250 0.84 +0.8
58,293 - EX28DRAFT_4250 0.89 +0.0
58,309 + -1.9
58,309 + -2.5
58,313 - +0.9
58,313 - -0.7
58,325 + -0.2
58,325 + -0.5
58,383 - +0.5
58,461 + +0.3
58,462 - +0.8
58,462 - +1.4
58,514 - +0.3
58,552 - -2.2
58,640 - +0.9
58,651 + -1.6
58,675 + +1.1
58,676 - -0.5
58,676 - -0.9
58,676 - +0.7
58,676 - +0.1
58,733 + EX28DRAFT_4251 0.19 +0.4
58,831 + EX28DRAFT_4251 0.37 +0.0
59,066 - EX28DRAFT_4251 0.79 -2.1
59,089 + EX28DRAFT_4251 0.83 -1.1
59,098 + EX28DRAFT_4251 0.85 -0.0
59,141 + +0.6
59,141 + +0.1
59,141 + -0.5
59,142 - -0.3
59,200 + +0.1
59,200 + -0.2
59,200 + +0.4
59,201 - +0.7
59,408 - EX28DRAFT_4252 0.25 -0.4
59,408 - EX28DRAFT_4252 0.25 +0.0
59,426 + EX28DRAFT_4252 0.28 +0.7
59,465 + EX28DRAFT_4252 0.34 +0.7
59,465 + EX28DRAFT_4252 0.34 +0.5
59,467 + EX28DRAFT_4252 0.35 -0.0
59,467 + EX28DRAFT_4252 0.35 +0.3
59,467 + EX28DRAFT_4252 0.35 +0.8
59,467 + EX28DRAFT_4252 0.35 -1.3
59,468 - EX28DRAFT_4252 0.35 -3.6
59,814 - -2.6
59,880 + -1.8
59,881 - +0.0

Or see this region's nucleotide sequence