Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3959

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3957 and EX28DRAFT_3958 are separated by 460 nucleotidesEX28DRAFT_3958 and EX28DRAFT_3959 are separated by 27 nucleotidesEX28DRAFT_3959 and EX28DRAFT_3960 are separated by 46 nucleotidesEX28DRAFT_3960 and EX28DRAFT_3961 are separated by 62 nucleotides EX28DRAFT_3957: EX28DRAFT_3957 - hypothetical protein, at 166,703 to 167,416 _3957 EX28DRAFT_3958: EX28DRAFT_3958 - hypothetical protein, at 167,877 to 168,032 _3958 EX28DRAFT_3959: EX28DRAFT_3959 - hypothetical protein, at 168,060 to 168,242 _3959 EX28DRAFT_3960: EX28DRAFT_3960 - Acetyltransferase (GNAT) domain, at 168,289 to 168,735 _3960 EX28DRAFT_3961: EX28DRAFT_3961 - EamA-like transporter family, at 168,798 to 169,631 _3961 Position (kb) 168 169Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 167.086 kb on + strand, within EX28DRAFT_3957at 167.087 kb on - strand, within EX28DRAFT_3957at 167.148 kb on + strand, within EX28DRAFT_3957at 167.166 kb on - strand, within EX28DRAFT_3957at 167.673 kb on + strandat 167.883 kb on - strandat 167.940 kb on + strand, within EX28DRAFT_3958at 167.940 kb on + strand, within EX28DRAFT_3958at 168.056 kb on + strandat 168.056 kb on + strandat 168.134 kb on + strand, within EX28DRAFT_3959at 168.157 kb on + strand, within EX28DRAFT_3959at 168.157 kb on + strand, within EX28DRAFT_3959at 168.158 kb on - strand, within EX28DRAFT_3959at 168.158 kb on - strand, within EX28DRAFT_3959at 168.158 kb on - strand, within EX28DRAFT_3959at 168.158 kb on - strand, within EX28DRAFT_3959at 168.222 kb on + strand, within EX28DRAFT_3959at 168.272 kb on - strandat 168.289 kb on - strandat 168.289 kb on - strandat 168.289 kb on - strandat 168.303 kb on - strandat 168.334 kb on + strand, within EX28DRAFT_3960at 168.334 kb on + strand, within EX28DRAFT_3960at 168.358 kb on - strand, within EX28DRAFT_3960at 168.423 kb on + strand, within EX28DRAFT_3960at 168.528 kb on + strand, within EX28DRAFT_3960at 168.541 kb on + strand, within EX28DRAFT_3960at 168.664 kb on + strand, within EX28DRAFT_3960at 168.681 kb on + strand, within EX28DRAFT_3960at 168.824 kb on - strandat 168.824 kb on - strandat 168.889 kb on - strand, within EX28DRAFT_3961at 168.937 kb on + strand, within EX28DRAFT_3961at 168.938 kb on - strand, within EX28DRAFT_3961at 168.938 kb on - strand, within EX28DRAFT_3961at 169.000 kb on + strand, within EX28DRAFT_3961at 169.000 kb on + strand, within EX28DRAFT_3961at 169.001 kb on - strand, within EX28DRAFT_3961at 169.011 kb on + strand, within EX28DRAFT_3961at 169.011 kb on + strand, within EX28DRAFT_3961at 169.011 kb on + strand, within EX28DRAFT_3961at 169.012 kb on - strand, within EX28DRAFT_3961at 169.035 kb on + strand, within EX28DRAFT_3961at 169.036 kb on - strand, within EX28DRAFT_3961at 169.036 kb on - strand, within EX28DRAFT_3961at 169.049 kb on + strand, within EX28DRAFT_3961at 169.205 kb on - strand, within EX28DRAFT_3961at 169.205 kb on - strand, within EX28DRAFT_3961

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
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167,086 + EX28DRAFT_3957 0.54 -3.1
167,087 - EX28DRAFT_3957 0.54 -0.2
167,148 + EX28DRAFT_3957 0.62 +0.6
167,166 - EX28DRAFT_3957 0.65 +0.2
167,673 + -2.6
167,883 - +1.1
167,940 + EX28DRAFT_3958 0.40 -3.1
167,940 + EX28DRAFT_3958 0.40 -0.4
168,056 + +0.1
168,056 + -0.1
168,134 + EX28DRAFT_3959 0.40 +0.3
168,157 + EX28DRAFT_3959 0.53 -0.0
168,157 + EX28DRAFT_3959 0.53 -1.0
168,158 - EX28DRAFT_3959 0.54 -0.7
168,158 - EX28DRAFT_3959 0.54 +0.7
168,158 - EX28DRAFT_3959 0.54 -1.1
168,158 - EX28DRAFT_3959 0.54 +0.4
168,222 + EX28DRAFT_3959 0.89 +0.4
168,272 - -0.5
168,289 - +0.5
168,289 - +0.2
168,289 - -0.7
168,303 - +0.1
168,334 + EX28DRAFT_3960 0.10 +1.1
168,334 + EX28DRAFT_3960 0.10 +0.4
168,358 - EX28DRAFT_3960 0.15 +0.3
168,423 + EX28DRAFT_3960 0.30 -0.5
168,528 + EX28DRAFT_3960 0.53 +0.2
168,541 + EX28DRAFT_3960 0.56 -3.1
168,664 + EX28DRAFT_3960 0.84 +0.7
168,681 + EX28DRAFT_3960 0.88 -2.6
168,824 - +0.4
168,824 - +0.0
168,889 - EX28DRAFT_3961 0.11 +0.4
168,937 + EX28DRAFT_3961 0.17 +0.3
168,938 - EX28DRAFT_3961 0.17 +1.3
168,938 - EX28DRAFT_3961 0.17 +0.8
169,000 + EX28DRAFT_3961 0.24 -1.3
169,000 + EX28DRAFT_3961 0.24 -0.2
169,001 - EX28DRAFT_3961 0.24 +0.3
169,011 + EX28DRAFT_3961 0.26 -0.4
169,011 + EX28DRAFT_3961 0.26 -0.6
169,011 + EX28DRAFT_3961 0.26 -4.6
169,012 - EX28DRAFT_3961 0.26 -0.3
169,035 + EX28DRAFT_3961 0.28 +0.8
169,036 - EX28DRAFT_3961 0.29 -0.3
169,036 - EX28DRAFT_3961 0.29 -0.2
169,049 + EX28DRAFT_3961 0.30 +0.3
169,205 - EX28DRAFT_3961 0.49 -0.2
169,205 - EX28DRAFT_3961 0.49 -1.5

Or see this region's nucleotide sequence