Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3856

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_3855 and EX28DRAFT_3856 are separated by 181 nucleotidesEX28DRAFT_3856 and EX28DRAFT_3857 are separated by 45 nucleotidesEX28DRAFT_3857 and EX28DRAFT_3858 overlap by 4 nucleotides EX28DRAFT_3855: EX28DRAFT_3855 - L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases, at 65,007 to 66,194 _3855 EX28DRAFT_3856: EX28DRAFT_3856 - Arabinose efflux permease, at 66,376 to 67,716 _3856 EX28DRAFT_3857: EX28DRAFT_3857 - tRNA (cytidine(34)-2'-O)-methyltransferase, at 67,762 to 68,235 _3857 EX28DRAFT_3858: EX28DRAFT_3858 - serine O-acetyltransferase, at 68,232 to 69,053 _3858 Position (kb) 66 67 68Strain fitness (log2 ratio) -2 -1 0 1 2at 65.392 kb on - strand, within EX28DRAFT_3855at 65.415 kb on - strand, within EX28DRAFT_3855at 65.664 kb on + strand, within EX28DRAFT_3855at 65.665 kb on - strand, within EX28DRAFT_3855at 65.957 kb on + strand, within EX28DRAFT_3855at 65.958 kb on - strand, within EX28DRAFT_3855at 65.983 kb on + strand, within EX28DRAFT_3855at 65.984 kb on - strand, within EX28DRAFT_3855at 66.000 kb on + strand, within EX28DRAFT_3855at 66.001 kb on - strand, within EX28DRAFT_3855at 66.001 kb on - strand, within EX28DRAFT_3855at 66.120 kb on - strandat 66.142 kb on + strandat 66.274 kb on + strandat 66.323 kb on - strandat 66.323 kb on - strandat 66.375 kb on + strandat 66.376 kb on - strandat 66.382 kb on + strandat 66.508 kb on + strandat 66.829 kb on - strand, within EX28DRAFT_3856at 66.829 kb on - strand, within EX28DRAFT_3856at 66.829 kb on - strand, within EX28DRAFT_3856at 66.835 kb on + strand, within EX28DRAFT_3856at 66.835 kb on + strand, within EX28DRAFT_3856at 66.835 kb on + strand, within EX28DRAFT_3856at 66.835 kb on + strand, within EX28DRAFT_3856at 66.889 kb on - strand, within EX28DRAFT_3856at 66.947 kb on + strand, within EX28DRAFT_3856at 67.175 kb on - strand, within EX28DRAFT_3856at 67.180 kb on - strand, within EX28DRAFT_3856at 67.195 kb on + strand, within EX28DRAFT_3856at 67.196 kb on - strand, within EX28DRAFT_3856at 67.198 kb on + strand, within EX28DRAFT_3856at 67.198 kb on + strand, within EX28DRAFT_3856at 67.198 kb on + strand, within EX28DRAFT_3856at 67.199 kb on - strand, within EX28DRAFT_3856at 67.208 kb on + strand, within EX28DRAFT_3856at 67.408 kb on - strand, within EX28DRAFT_3856at 67.684 kb on + strandat 67.685 kb on - strandat 67.714 kb on + strandat 67.714 kb on + strandat 67.715 kb on - strandat 67.715 kb on - strandat 67.751 kb on - strandat 67.812 kb on + strand, within EX28DRAFT_3857at 67.813 kb on - strand, within EX28DRAFT_3857at 67.872 kb on + strand, within EX28DRAFT_3857at 67.873 kb on - strand, within EX28DRAFT_3857at 68.019 kb on + strand, within EX28DRAFT_3857at 68.047 kb on + strand, within EX28DRAFT_3857at 68.047 kb on + strand, within EX28DRAFT_3857at 68.048 kb on - strand, within EX28DRAFT_3857at 68.186 kb on - strand, within EX28DRAFT_3857at 68.186 kb on - strand, within EX28DRAFT_3857at 68.186 kb on - strand, within EX28DRAFT_3857at 68.233 kb on + strandat 68.259 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
remove
65,392 - EX28DRAFT_3855 0.32 -0.8
65,415 - EX28DRAFT_3855 0.34 -0.7
65,664 + EX28DRAFT_3855 0.55 +2.7
65,665 - EX28DRAFT_3855 0.55 -0.1
65,957 + EX28DRAFT_3855 0.80 +0.6
65,958 - EX28DRAFT_3855 0.80 +0.6
65,983 + EX28DRAFT_3855 0.82 +0.3
65,984 - EX28DRAFT_3855 0.82 -1.1
66,000 + EX28DRAFT_3855 0.84 -0.6
66,001 - EX28DRAFT_3855 0.84 -0.0
66,001 - EX28DRAFT_3855 0.84 +0.2
66,120 - -0.5
66,142 + -0.9
66,274 + -0.0
66,323 - -1.5
66,323 - -0.6
66,375 + -0.2
66,376 - -2.7
66,382 + -0.0
66,508 + +0.2
66,829 - EX28DRAFT_3856 0.34 +0.1
66,829 - EX28DRAFT_3856 0.34 -0.0
66,829 - EX28DRAFT_3856 0.34 +0.5
66,835 + EX28DRAFT_3856 0.34 -0.4
66,835 + EX28DRAFT_3856 0.34 +0.4
66,835 + EX28DRAFT_3856 0.34 +0.4
66,835 + EX28DRAFT_3856 0.34 +0.5
66,889 - EX28DRAFT_3856 0.38 -0.0
66,947 + EX28DRAFT_3856 0.43 +0.7
67,175 - EX28DRAFT_3856 0.60 +0.8
67,180 - EX28DRAFT_3856 0.60 -0.0
67,195 + EX28DRAFT_3856 0.61 +1.0
67,196 - EX28DRAFT_3856 0.61 +0.2
67,198 + EX28DRAFT_3856 0.61 +0.1
67,198 + EX28DRAFT_3856 0.61 +0.1
67,198 + EX28DRAFT_3856 0.61 -0.7
67,199 - EX28DRAFT_3856 0.61 +0.2
67,208 + EX28DRAFT_3856 0.62 -0.7
67,408 - EX28DRAFT_3856 0.77 +1.0
67,684 + +1.1
67,685 - -0.7
67,714 + -0.4
67,714 + -0.1
67,715 - -0.1
67,715 - +0.0
67,751 - +0.2
67,812 + EX28DRAFT_3857 0.11 +0.3
67,813 - EX28DRAFT_3857 0.11 +0.6
67,872 + EX28DRAFT_3857 0.23 +0.6
67,873 - EX28DRAFT_3857 0.23 +1.6
68,019 + EX28DRAFT_3857 0.54 -1.0
68,047 + EX28DRAFT_3857 0.60 -0.7
68,047 + EX28DRAFT_3857 0.60 +0.5
68,048 - EX28DRAFT_3857 0.60 +0.3
68,186 - EX28DRAFT_3857 0.89 -0.1
68,186 - EX28DRAFT_3857 0.89 +0.4
68,186 - EX28DRAFT_3857 0.89 -0.2
68,233 + -0.2
68,259 - +0.2

Or see this region's nucleotide sequence