Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3439

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3438 and EX28DRAFT_3439 are separated by 51 nucleotidesEX28DRAFT_3439 and EX28DRAFT_3440 are separated by 129 nucleotides EX28DRAFT_3438: EX28DRAFT_3438 - alpha,alpha-phosphotrehalase, at 108,074 to 109,717 _3438 EX28DRAFT_3439: EX28DRAFT_3439 - PTS system, trehalose-specific IIBC component, at 109,769 to 111,187 _3439 EX28DRAFT_3440: EX28DRAFT_3440 - trehalose operon repressor, proteobacterial, at 111,317 to 112,264 _3440 Position (kb) 109 110 111 112Strain fitness (log2 ratio) -3 -2 -1 0 1at 108.872 kb on + strand, within EX28DRAFT_3438at 108.872 kb on + strand, within EX28DRAFT_3438at 108.873 kb on - strand, within EX28DRAFT_3438at 108.893 kb on - strand, within EX28DRAFT_3438at 109.050 kb on + strand, within EX28DRAFT_3438at 109.206 kb on - strand, within EX28DRAFT_3438at 109.239 kb on + strand, within EX28DRAFT_3438at 109.239 kb on + strand, within EX28DRAFT_3438at 109.240 kb on - strand, within EX28DRAFT_3438at 109.242 kb on + strand, within EX28DRAFT_3438at 109.243 kb on - strand, within EX28DRAFT_3438at 109.339 kb on - strand, within EX28DRAFT_3438at 109.339 kb on - strand, within EX28DRAFT_3438at 109.510 kb on - strand, within EX28DRAFT_3438at 109.549 kb on + strand, within EX28DRAFT_3438at 109.550 kb on - strand, within EX28DRAFT_3438at 109.552 kb on - strand, within EX28DRAFT_3438at 109.552 kb on - strand, within EX28DRAFT_3438at 109.552 kb on - strand, within EX28DRAFT_3438at 109.552 kb on - strand, within EX28DRAFT_3438at 109.718 kb on - strandat 109.770 kb on + strandat 109.771 kb on - strandat 109.801 kb on + strandat 109.802 kb on - strandat 109.802 kb on - strandat 109.810 kb on - strandat 110.025 kb on + strand, within EX28DRAFT_3439at 110.025 kb on + strand, within EX28DRAFT_3439at 110.026 kb on - strand, within EX28DRAFT_3439at 110.253 kb on + strand, within EX28DRAFT_3439at 110.418 kb on + strand, within EX28DRAFT_3439at 110.419 kb on - strand, within EX28DRAFT_3439at 110.528 kb on - strand, within EX28DRAFT_3439at 110.570 kb on + strand, within EX28DRAFT_3439at 110.571 kb on - strand, within EX28DRAFT_3439at 110.571 kb on - strand, within EX28DRAFT_3439at 110.683 kb on - strand, within EX28DRAFT_3439at 110.722 kb on - strand, within EX28DRAFT_3439at 110.761 kb on + strand, within EX28DRAFT_3439at 110.762 kb on - strand, within EX28DRAFT_3439at 110.810 kb on + strand, within EX28DRAFT_3439at 110.890 kb on + strand, within EX28DRAFT_3439at 110.967 kb on + strand, within EX28DRAFT_3439at 111.220 kb on + strandat 111.221 kb on - strandat 111.221 kb on - strandat 111.221 kb on - strandat 111.240 kb on + strandat 111.318 kb on + strandat 111.319 kb on - strandat 111.337 kb on + strandat 111.342 kb on - strandat 111.928 kb on + strand, within EX28DRAFT_3440at 111.987 kb on + strand, within EX28DRAFT_3440

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
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108,872 + EX28DRAFT_3438 0.49 +1.1
108,872 + EX28DRAFT_3438 0.49 -0.1
108,873 - EX28DRAFT_3438 0.49 +0.0
108,893 - EX28DRAFT_3438 0.50 +0.4
109,050 + EX28DRAFT_3438 0.59 -0.4
109,206 - EX28DRAFT_3438 0.69 +0.8
109,239 + EX28DRAFT_3438 0.71 +1.2
109,239 + EX28DRAFT_3438 0.71 +0.1
109,240 - EX28DRAFT_3438 0.71 +0.2
109,242 + EX28DRAFT_3438 0.71 -3.3
109,243 - EX28DRAFT_3438 0.71 +0.1
109,339 - EX28DRAFT_3438 0.77 -0.3
109,339 - EX28DRAFT_3438 0.77 +0.3
109,510 - EX28DRAFT_3438 0.87 -0.5
109,549 + EX28DRAFT_3438 0.90 -0.2
109,550 - EX28DRAFT_3438 0.90 +0.0
109,552 - EX28DRAFT_3438 0.90 +0.1
109,552 - EX28DRAFT_3438 0.90 +0.9
109,552 - EX28DRAFT_3438 0.90 +1.5
109,552 - EX28DRAFT_3438 0.90 -2.8
109,718 - +0.6
109,770 + +0.5
109,771 - +0.5
109,801 + +0.2
109,802 - +0.0
109,802 - +0.4
109,810 - +0.3
110,025 + EX28DRAFT_3439 0.18 +0.4
110,025 + EX28DRAFT_3439 0.18 +0.0
110,026 - EX28DRAFT_3439 0.18 -1.6
110,253 + EX28DRAFT_3439 0.34 +1.5
110,418 + EX28DRAFT_3439 0.46 -1.0
110,419 - EX28DRAFT_3439 0.46 -0.8
110,528 - EX28DRAFT_3439 0.53 -0.3
110,570 + EX28DRAFT_3439 0.56 -1.3
110,571 - EX28DRAFT_3439 0.57 -0.8
110,571 - EX28DRAFT_3439 0.57 +1.5
110,683 - EX28DRAFT_3439 0.64 +0.2
110,722 - EX28DRAFT_3439 0.67 -1.2
110,761 + EX28DRAFT_3439 0.70 +0.8
110,762 - EX28DRAFT_3439 0.70 +0.8
110,810 + EX28DRAFT_3439 0.73 -1.1
110,890 + EX28DRAFT_3439 0.79 +1.2
110,967 + EX28DRAFT_3439 0.84 -0.7
111,220 + -2.9
111,221 - -1.7
111,221 - -0.3
111,221 - +0.2
111,240 + -0.1
111,318 + -1.1
111,319 - -1.1
111,337 + -1.0
111,342 - -1.3
111,928 + EX28DRAFT_3440 0.64 -0.4
111,987 + EX28DRAFT_3440 0.71 +0.0

Or see this region's nucleotide sequence