Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3295

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3294 and EX28DRAFT_3295 are separated by 77 nucleotidesEX28DRAFT_3295 and EX28DRAFT_3296 are separated by 84 nucleotides EX28DRAFT_3294: EX28DRAFT_3294 - Transcriptional regulator, at 590,824 to 591,750 _3294 EX28DRAFT_3295: EX28DRAFT_3295 - Predicted Zn-dependent proteases and their inactivated homologs, at 591,828 to 593,273 _3295 EX28DRAFT_3296: EX28DRAFT_3296 - TIGR02099 family protein, at 593,358 to 597,161 _3296 Position (kb) 591 592 593 594Strain fitness (log2 ratio) -3 -2 -1 0 1at 591.036 kb on + strand, within EX28DRAFT_3294at 591.037 kb on - strand, within EX28DRAFT_3294at 591.073 kb on + strand, within EX28DRAFT_3294at 591.073 kb on + strand, within EX28DRAFT_3294at 591.126 kb on + strand, within EX28DRAFT_3294at 591.126 kb on + strand, within EX28DRAFT_3294at 591.535 kb on + strand, within EX28DRAFT_3294at 591.536 kb on - strand, within EX28DRAFT_3294at 591.634 kb on + strand, within EX28DRAFT_3294at 591.635 kb on - strand, within EX28DRAFT_3294at 591.666 kb on - strandat 591.675 kb on + strandat 591.675 kb on + strandat 591.675 kb on + strandat 591.676 kb on - strandat 591.678 kb on + strandat 591.678 kb on + strandat 591.678 kb on + strandat 591.678 kb on + strandat 591.678 kb on + strandat 591.679 kb on - strandat 591.679 kb on - strandat 591.679 kb on - strandat 591.679 kb on - strandat 591.679 kb on - strandat 591.682 kb on + strandat 591.682 kb on + strandat 591.683 kb on - strandat 591.694 kb on + strandat 591.695 kb on - strandat 591.748 kb on + strandat 591.829 kb on + strandat 592.042 kb on + strand, within EX28DRAFT_3295at 592.043 kb on - strand, within EX28DRAFT_3295at 592.174 kb on + strand, within EX28DRAFT_3295at 592.174 kb on + strand, within EX28DRAFT_3295at 592.175 kb on - strand, within EX28DRAFT_3295at 592.182 kb on - strand, within EX28DRAFT_3295at 592.210 kb on + strand, within EX28DRAFT_3295at 592.279 kb on + strand, within EX28DRAFT_3295at 592.280 kb on - strand, within EX28DRAFT_3295at 592.786 kb on + strand, within EX28DRAFT_3295at 592.915 kb on + strand, within EX28DRAFT_3295at 592.915 kb on + strand, within EX28DRAFT_3295at 593.035 kb on + strand, within EX28DRAFT_3295at 593.096 kb on - strand, within EX28DRAFT_3295at 593.124 kb on + strand, within EX28DRAFT_3295at 593.125 kb on - strand, within EX28DRAFT_3295at 593.158 kb on + strandat 593.158 kb on + strandat 593.256 kb on + strandat 593.276 kb on + strandat 593.276 kb on + strandat 593.276 kb on + strandat 593.277 kb on - strandat 593.282 kb on + strandat 593.308 kb on + strandat 593.308 kb on + strandat 593.310 kb on + strandat 593.310 kb on + strandat 593.310 kb on + strandat 593.311 kb on - strandat 593.319 kb on + strandat 593.319 kb on + strandat 593.320 kb on - strandat 593.412 kb on - strandat 593.707 kb on + strandat 593.727 kb on - strandat 593.945 kb on + strand, within EX28DRAFT_3296at 593.985 kb on - strand, within EX28DRAFT_3296at 594.239 kb on + strand, within EX28DRAFT_3296at 594.240 kb on - strand, within EX28DRAFT_3296at 594.272 kb on - strand, within EX28DRAFT_3296

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
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591,036 + EX28DRAFT_3294 0.23 -0.7
591,037 - EX28DRAFT_3294 0.23 -1.5
591,073 + EX28DRAFT_3294 0.27 -1.1
591,073 + EX28DRAFT_3294 0.27 +0.8
591,126 + EX28DRAFT_3294 0.33 +1.2
591,126 + EX28DRAFT_3294 0.33 +0.6
591,535 + EX28DRAFT_3294 0.77 -0.4
591,536 - EX28DRAFT_3294 0.77 -0.3
591,634 + EX28DRAFT_3294 0.87 -0.0
591,635 - EX28DRAFT_3294 0.87 +0.2
591,666 - +0.1
591,675 + +0.4
591,675 + -0.3
591,675 + -0.2
591,676 - +0.4
591,678 + -2.9
591,678 + -0.7
591,678 + +0.5
591,678 + -1.1
591,678 + -3.7
591,679 - +1.1
591,679 - -0.5
591,679 - +0.6
591,679 - +0.8
591,679 - -1.1
591,682 + +0.9
591,682 + +0.4
591,683 - +0.4
591,694 + -0.1
591,695 - -0.2
591,748 + -3.0
591,829 + +0.2
592,042 + EX28DRAFT_3295 0.15 +0.5
592,043 - EX28DRAFT_3295 0.15 -2.4
592,174 + EX28DRAFT_3295 0.24 -0.3
592,174 + EX28DRAFT_3295 0.24 +1.0
592,175 - EX28DRAFT_3295 0.24 +0.4
592,182 - EX28DRAFT_3295 0.24 +1.5
592,210 + EX28DRAFT_3295 0.26 +1.4
592,279 + EX28DRAFT_3295 0.31 +0.6
592,280 - EX28DRAFT_3295 0.31 +0.3
592,786 + EX28DRAFT_3295 0.66 +0.9
592,915 + EX28DRAFT_3295 0.75 -0.2
592,915 + EX28DRAFT_3295 0.75 -0.5
593,035 + EX28DRAFT_3295 0.83 -0.7
593,096 - EX28DRAFT_3295 0.88 +0.1
593,124 + EX28DRAFT_3295 0.90 +0.5
593,125 - EX28DRAFT_3295 0.90 +0.2
593,158 + -1.0
593,158 + +0.5
593,256 + -0.7
593,276 + +0.6
593,276 + -0.1
593,276 + +0.5
593,277 - -0.2
593,282 + -1.5
593,308 + -1.0
593,308 + -0.5
593,310 + +0.8
593,310 + +1.2
593,310 + -0.5
593,311 - -0.4
593,319 + -0.9
593,319 + -0.4
593,320 - +0.6
593,412 - +0.5
593,707 + +1.0
593,727 - -1.8
593,945 + EX28DRAFT_3296 0.15 -0.2
593,985 - EX28DRAFT_3296 0.16 +0.7
594,239 + EX28DRAFT_3296 0.23 -0.2
594,240 - EX28DRAFT_3296 0.23 +0.9
594,272 - EX28DRAFT_3296 0.24 -0.0

Or see this region's nucleotide sequence