Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3234

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3231 and EX28DRAFT_3232 are separated by 151 nucleotidesEX28DRAFT_3232 and EX28DRAFT_3233 are separated by 74 nucleotidesEX28DRAFT_3233 and EX28DRAFT_3234 are separated by 30 nucleotidesEX28DRAFT_3234 and EX28DRAFT_3235 are separated by 2 nucleotidesEX28DRAFT_3235 and EX28DRAFT_3236 overlap by 4 nucleotides EX28DRAFT_3231: EX28DRAFT_3231 - putative RNA-binding protein, YhbY family, at 529,675 to 530,007 _3231 EX28DRAFT_3232: EX28DRAFT_3232 - transcription elongation factor GreA, at 530,159 to 530,635 _3232 EX28DRAFT_3233: EX28DRAFT_3233 - RNA, at 530,710 to 530,833 _3233 EX28DRAFT_3234: EX28DRAFT_3234 - D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family, at 530,864 to 532,297 _3234 EX28DRAFT_3235: EX28DRAFT_3235 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 532,300 to 532,962 _3235 EX28DRAFT_3236: EX28DRAFT_3236 - Signal transduction histidine kinase, at 532,959 to 534,002 _3236 Position (kb) 530 531 532 533Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 529.933 kb on - strand, within EX28DRAFT_3231at 529.933 kb on - strand, within EX28DRAFT_3231at 529.951 kb on - strand, within EX28DRAFT_3231at 529.978 kb on - strandat 530.093 kb on + strandat 530.144 kb on + strandat 530.160 kb on + strandat 530.161 kb on - strandat 530.368 kb on + strand, within EX28DRAFT_3232at 530.390 kb on - strand, within EX28DRAFT_3232at 530.444 kb on - strand, within EX28DRAFT_3232at 530.450 kb on - strand, within EX28DRAFT_3232at 530.453 kb on - strand, within EX28DRAFT_3232at 530.613 kb on - strandat 530.613 kb on - strandat 530.641 kb on - strandat 530.642 kb on + strandat 530.643 kb on - strandat 530.765 kb on + strand, within EX28DRAFT_3233at 530.790 kb on - strand, within EX28DRAFT_3233at 530.826 kb on - strandat 530.826 kb on - strandat 530.829 kb on - strandat 530.905 kb on - strandat 530.939 kb on + strandat 530.940 kb on - strandat 530.940 kb on - strandat 530.944 kb on + strandat 530.944 kb on + strandat 531.196 kb on + strand, within EX28DRAFT_3234at 531.376 kb on + strand, within EX28DRAFT_3234at 531.424 kb on - strand, within EX28DRAFT_3234at 531.623 kb on + strand, within EX28DRAFT_3234at 531.666 kb on + strand, within EX28DRAFT_3234at 531.666 kb on + strand, within EX28DRAFT_3234at 531.756 kb on + strand, within EX28DRAFT_3234at 531.804 kb on + strand, within EX28DRAFT_3234at 531.805 kb on - strand, within EX28DRAFT_3234at 531.914 kb on - strand, within EX28DRAFT_3234at 531.914 kb on - strand, within EX28DRAFT_3234at 531.917 kb on - strand, within EX28DRAFT_3234at 531.950 kb on - strand, within EX28DRAFT_3234at 531.990 kb on - strand, within EX28DRAFT_3234at 532.015 kb on - strand, within EX28DRAFT_3234at 532.136 kb on + strand, within EX28DRAFT_3234at 532.137 kb on - strand, within EX28DRAFT_3234at 532.194 kb on - strandat 532.194 kb on - strandat 532.240 kb on + strandat 532.272 kb on - strandat 532.272 kb on - strandat 532.274 kb on - strandat 532.284 kb on - strandat 532.291 kb on + strandat 532.291 kb on + strandat 532.296 kb on - strandat 532.307 kb on + strandat 532.307 kb on + strandat 532.307 kb on + strandat 532.308 kb on - strandat 532.313 kb on + strandat 532.314 kb on - strandat 532.560 kb on + strand, within EX28DRAFT_3235at 532.560 kb on + strand, within EX28DRAFT_3235at 532.665 kb on + strand, within EX28DRAFT_3235at 532.671 kb on + strand, within EX28DRAFT_3235at 532.677 kb on - strand, within EX28DRAFT_3235at 532.693 kb on - strand, within EX28DRAFT_3235at 532.721 kb on + strand, within EX28DRAFT_3235at 532.830 kb on + strand, within EX28DRAFT_3235at 532.831 kb on - strand, within EX28DRAFT_3235at 532.831 kb on - strand, within EX28DRAFT_3235at 532.834 kb on + strand, within EX28DRAFT_3235at 532.834 kb on + strand, within EX28DRAFT_3235at 532.834 kb on + strand, within EX28DRAFT_3235at 532.834 kb on + strand, within EX28DRAFT_3235at 532.863 kb on + strand, within EX28DRAFT_3235at 533.023 kb on + strandat 533.229 kb on - strand, within EX28DRAFT_3236at 533.269 kb on + strand, within EX28DRAFT_3236at 533.269 kb on + strand, within EX28DRAFT_3236at 533.270 kb on - strand, within EX28DRAFT_3236at 533.270 kb on - strand, within EX28DRAFT_3236at 533.282 kb on + strand, within EX28DRAFT_3236at 533.282 kb on + strand, within EX28DRAFT_3236at 533.283 kb on - strand, within EX28DRAFT_3236at 533.283 kb on - strand, within EX28DRAFT_3236at 533.283 kb on - strand, within EX28DRAFT_3236at 533.287 kb on - strand, within EX28DRAFT_3236at 533.287 kb on - strand, within EX28DRAFT_3236

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
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529,933 - EX28DRAFT_3231 0.77 +0.5
529,933 - EX28DRAFT_3231 0.77 +0.0
529,951 - EX28DRAFT_3231 0.83 -1.3
529,978 - -1.0
530,093 + +1.2
530,144 + +0.7
530,160 + -0.4
530,161 - -1.1
530,368 + EX28DRAFT_3232 0.44 +0.1
530,390 - EX28DRAFT_3232 0.48 +0.2
530,444 - EX28DRAFT_3232 0.60 -4.8
530,450 - EX28DRAFT_3232 0.61 +0.3
530,453 - EX28DRAFT_3232 0.62 +0.4
530,613 - -0.7
530,613 - +0.3
530,641 - +0.0
530,642 + +0.5
530,643 - -0.0
530,765 + EX28DRAFT_3233 0.44 +0.8
530,790 - EX28DRAFT_3233 0.65 +0.5
530,826 - +0.2
530,826 - +0.5
530,829 - -1.5
530,905 - +0.9
530,939 + -0.5
530,940 - +1.0
530,940 - +0.1
530,944 + +0.6
530,944 + -0.5
531,196 + EX28DRAFT_3234 0.23 -0.8
531,376 + EX28DRAFT_3234 0.36 +0.7
531,424 - EX28DRAFT_3234 0.39 +0.3
531,623 + EX28DRAFT_3234 0.53 +1.4
531,666 + EX28DRAFT_3234 0.56 -0.1
531,666 + EX28DRAFT_3234 0.56 +0.5
531,756 + EX28DRAFT_3234 0.62 +0.3
531,804 + EX28DRAFT_3234 0.66 -3.2
531,805 - EX28DRAFT_3234 0.66 +0.3
531,914 - EX28DRAFT_3234 0.73 -0.2
531,914 - EX28DRAFT_3234 0.73 -0.6
531,917 - EX28DRAFT_3234 0.73 +0.2
531,950 - EX28DRAFT_3234 0.76 -0.4
531,990 - EX28DRAFT_3234 0.79 -0.1
532,015 - EX28DRAFT_3234 0.80 +0.3
532,136 + EX28DRAFT_3234 0.89 +0.8
532,137 - EX28DRAFT_3234 0.89 +0.3
532,194 - -0.0
532,194 - -3.9
532,240 + -0.2
532,272 - -2.4
532,272 - +1.0
532,274 - +1.0
532,284 - +1.0
532,291 + -0.1
532,291 + -2.1
532,296 - +0.9
532,307 + +1.1
532,307 + -3.1
532,307 + -0.3
532,308 - -0.0
532,313 + +0.5
532,314 - -1.3
532,560 + EX28DRAFT_3235 0.39 +0.6
532,560 + EX28DRAFT_3235 0.39 +1.0
532,665 + EX28DRAFT_3235 0.55 +0.1
532,671 + EX28DRAFT_3235 0.56 +2.2
532,677 - EX28DRAFT_3235 0.57 -1.0
532,693 - EX28DRAFT_3235 0.59 +0.4
532,721 + EX28DRAFT_3235 0.63 -0.8
532,830 + EX28DRAFT_3235 0.80 +0.6
532,831 - EX28DRAFT_3235 0.80 -3.2
532,831 - EX28DRAFT_3235 0.80 +0.2
532,834 + EX28DRAFT_3235 0.81 -0.3
532,834 + EX28DRAFT_3235 0.81 -2.9
532,834 + EX28DRAFT_3235 0.81 -0.1
532,834 + EX28DRAFT_3235 0.81 -0.6
532,863 + EX28DRAFT_3235 0.85 +0.1
533,023 + +0.5
533,229 - EX28DRAFT_3236 0.26 +0.2
533,269 + EX28DRAFT_3236 0.30 +0.4
533,269 + EX28DRAFT_3236 0.30 +0.6
533,270 - EX28DRAFT_3236 0.30 +0.1
533,270 - EX28DRAFT_3236 0.30 +1.6
533,282 + EX28DRAFT_3236 0.31 +0.1
533,282 + EX28DRAFT_3236 0.31 -0.1
533,283 - EX28DRAFT_3236 0.31 -0.3
533,283 - EX28DRAFT_3236 0.31 +0.1
533,283 - EX28DRAFT_3236 0.31 -0.1
533,287 - EX28DRAFT_3236 0.31 +1.2
533,287 - EX28DRAFT_3236 0.31 -0.4

Or see this region's nucleotide sequence