Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2929

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2927 and EX28DRAFT_2928 are separated by 121 nucleotidesEX28DRAFT_2928 and EX28DRAFT_2929 are separated by 27 nucleotidesEX28DRAFT_2929 and EX28DRAFT_2930 are separated by 10 nucleotidesEX28DRAFT_2930 and EX28DRAFT_2931 are separated by 176 nucleotides EX28DRAFT_2927: EX28DRAFT_2927 - Transcriptional regulators, at 238,539 to 239,009 _2927 EX28DRAFT_2928: EX28DRAFT_2928 - Putative threonine efflux protein, at 239,131 to 239,736 _2928 EX28DRAFT_2929: EX28DRAFT_2929 - Predicted acetyltransferase, at 239,764 to 240,036 _2929 EX28DRAFT_2930: EX28DRAFT_2930 - Uncharacterized conserved protein, at 240,047 to 240,277 _2930 EX28DRAFT_2931: EX28DRAFT_2931 - Signal transduction histidine kinase regulating citrate/malate metabolism, at 240,454 to 242,091 _2931 Position (kb) 239 240 241Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 238.956 kb on + strand, within EX28DRAFT_2927at 238.974 kb on + strandat 239.136 kb on + strandat 239.136 kb on + strandat 239.137 kb on - strandat 239.172 kb on + strandat 239.306 kb on + strand, within EX28DRAFT_2928at 239.595 kb on + strand, within EX28DRAFT_2928at 239.595 kb on + strand, within EX28DRAFT_2928at 239.605 kb on + strand, within EX28DRAFT_2928at 239.605 kb on + strand, within EX28DRAFT_2928at 239.605 kb on + strand, within EX28DRAFT_2928at 239.606 kb on - strand, within EX28DRAFT_2928at 239.606 kb on - strand, within EX28DRAFT_2928at 239.669 kb on + strand, within EX28DRAFT_2928at 239.711 kb on + strandat 239.717 kb on + strandat 239.717 kb on + strandat 239.718 kb on - strandat 239.784 kb on - strandat 239.784 kb on - strandat 239.797 kb on - strand, within EX28DRAFT_2929at 239.965 kb on + strand, within EX28DRAFT_2929at 239.966 kb on - strand, within EX28DRAFT_2929at 239.966 kb on - strand, within EX28DRAFT_2929at 240.006 kb on - strand, within EX28DRAFT_2929at 240.060 kb on + strandat 240.099 kb on - strand, within EX28DRAFT_2930at 240.154 kb on + strand, within EX28DRAFT_2930at 240.154 kb on + strand, within EX28DRAFT_2930at 240.154 kb on + strand, within EX28DRAFT_2930at 240.184 kb on + strand, within EX28DRAFT_2930at 240.216 kb on + strand, within EX28DRAFT_2930at 240.263 kb on + strandat 240.264 kb on - strandat 240.291 kb on + strandat 240.295 kb on + strandat 240.296 kb on - strandat 240.296 kb on - strandat 240.298 kb on + strandat 240.298 kb on + strandat 240.298 kb on + strandat 240.340 kb on + strandat 240.340 kb on + strandat 240.340 kb on + strandat 240.341 kb on - strandat 240.438 kb on - strandat 240.491 kb on + strandat 240.518 kb on + strandat 240.519 kb on - strandat 240.521 kb on + strandat 240.521 kb on + strandat 240.522 kb on - strandat 240.522 kb on - strandat 240.654 kb on + strand, within EX28DRAFT_2931at 240.654 kb on + strand, within EX28DRAFT_2931at 240.655 kb on - strand, within EX28DRAFT_2931at 240.710 kb on - strand, within EX28DRAFT_2931at 240.772 kb on - strand, within EX28DRAFT_2931at 240.809 kb on + strand, within EX28DRAFT_2931at 240.934 kb on + strand, within EX28DRAFT_2931at 240.934 kb on + strand, within EX28DRAFT_2931at 240.934 kb on + strand, within EX28DRAFT_2931at 240.935 kb on - strand, within EX28DRAFT_2931at 240.935 kb on - strand, within EX28DRAFT_2931at 240.935 kb on - strand, within EX28DRAFT_2931at 240.935 kb on - strand, within EX28DRAFT_2931at 240.936 kb on + strand, within EX28DRAFT_2931at 240.936 kb on + strand, within EX28DRAFT_2931at 240.936 kb on + strand, within EX28DRAFT_2931at 240.937 kb on - strand, within EX28DRAFT_2931at 240.937 kb on - strand, within EX28DRAFT_2931at 240.937 kb on - strand, within EX28DRAFT_2931at 241.026 kb on + strand, within EX28DRAFT_2931

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
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238,956 + EX28DRAFT_2927 0.89 +1.8
238,974 + +0.4
239,136 + +0.7
239,136 + +0.5
239,137 - +0.7
239,172 + +0.3
239,306 + EX28DRAFT_2928 0.29 -0.3
239,595 + EX28DRAFT_2928 0.77 -0.1
239,595 + EX28DRAFT_2928 0.77 -0.1
239,605 + EX28DRAFT_2928 0.78 +2.4
239,605 + EX28DRAFT_2928 0.78 +0.1
239,605 + EX28DRAFT_2928 0.78 +0.9
239,606 - EX28DRAFT_2928 0.78 +0.1
239,606 - EX28DRAFT_2928 0.78 -0.1
239,669 + EX28DRAFT_2928 0.89 +0.4
239,711 + +0.0
239,717 + -0.0
239,717 + -2.3
239,718 - -2.4
239,784 - +0.1
239,784 - -0.3
239,797 - EX28DRAFT_2929 0.12 +0.8
239,965 + EX28DRAFT_2929 0.74 +0.4
239,966 - EX28DRAFT_2929 0.74 +1.6
239,966 - EX28DRAFT_2929 0.74 +0.4
240,006 - EX28DRAFT_2929 0.89 +0.3
240,060 + +0.6
240,099 - EX28DRAFT_2930 0.23 -0.3
240,154 + EX28DRAFT_2930 0.46 -0.7
240,154 + EX28DRAFT_2930 0.46 -0.4
240,154 + EX28DRAFT_2930 0.46 -0.3
240,184 + EX28DRAFT_2930 0.59 +1.8
240,216 + EX28DRAFT_2930 0.73 +0.2
240,263 + -0.1
240,264 - -0.7
240,291 + +0.8
240,295 + +2.4
240,296 - -1.4
240,296 - +0.4
240,298 + +0.4
240,298 + +0.7
240,298 + -1.2
240,340 + +0.0
240,340 + +0.3
240,340 + +0.9
240,341 - +0.2
240,438 - +0.4
240,491 + -0.8
240,518 + -0.3
240,519 - -1.3
240,521 + +0.2
240,521 + +0.5
240,522 - -3.9
240,522 - +0.6
240,654 + EX28DRAFT_2931 0.12 +1.2
240,654 + EX28DRAFT_2931 0.12 -0.3
240,655 - EX28DRAFT_2931 0.12 -0.7
240,710 - EX28DRAFT_2931 0.16 +0.0
240,772 - EX28DRAFT_2931 0.19 +0.8
240,809 + EX28DRAFT_2931 0.22 -1.0
240,934 + EX28DRAFT_2931 0.29 -0.4
240,934 + EX28DRAFT_2931 0.29 +1.0
240,934 + EX28DRAFT_2931 0.29 -0.6
240,935 - EX28DRAFT_2931 0.29 -0.1
240,935 - EX28DRAFT_2931 0.29 +0.1
240,935 - EX28DRAFT_2931 0.29 +0.4
240,935 - EX28DRAFT_2931 0.29 -4.4
240,936 + EX28DRAFT_2931 0.29 -0.4
240,936 + EX28DRAFT_2931 0.29 -0.7
240,936 + EX28DRAFT_2931 0.29 -2.0
240,937 - EX28DRAFT_2931 0.29 +0.1
240,937 - EX28DRAFT_2931 0.29 +1.0
240,937 - EX28DRAFT_2931 0.29 +0.0
241,026 + EX28DRAFT_2931 0.35 +2.0

Or see this region's nucleotide sequence