Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2594

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2592 and EX28DRAFT_2593 overlap by 4 nucleotidesEX28DRAFT_2593 and EX28DRAFT_2594 are separated by 249 nucleotidesEX28DRAFT_2594 and EX28DRAFT_2595 overlap by 4 nucleotides EX28DRAFT_2592: EX28DRAFT_2592 - D-alanine--D-alanine ligase, at 2,626,721 to 2,627,821 _2592 EX28DRAFT_2593: EX28DRAFT_2593 - Protein of unknown function (DUF2754), at 2,627,818 to 2,628,045 _2593 EX28DRAFT_2594: EX28DRAFT_2594 - Protein of unknown function (DUF2755), at 2,628,295 to 2,628,594 _2594 EX28DRAFT_2595: EX28DRAFT_2595 - Protein of unknown function (DUF1615), at 2,628,591 to 2,629,688 _2595 Position (kb) 2628 2629Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 2627.369 kb on - strand, within EX28DRAFT_2592at 2627.389 kb on + strand, within EX28DRAFT_2592at 2627.393 kb on - strand, within EX28DRAFT_2592at 2627.393 kb on - strand, within EX28DRAFT_2592at 2627.466 kb on + strand, within EX28DRAFT_2592at 2627.467 kb on - strand, within EX28DRAFT_2592at 2627.467 kb on - strand, within EX28DRAFT_2592at 2627.487 kb on - strand, within EX28DRAFT_2592at 2627.498 kb on + strand, within EX28DRAFT_2592at 2627.498 kb on + strand, within EX28DRAFT_2592at 2627.498 kb on + strand, within EX28DRAFT_2592at 2627.499 kb on - strand, within EX28DRAFT_2592at 2627.499 kb on - strand, within EX28DRAFT_2592at 2627.499 kb on - strand, within EX28DRAFT_2592at 2627.560 kb on + strand, within EX28DRAFT_2592at 2627.690 kb on - strand, within EX28DRAFT_2592at 2627.924 kb on + strand, within EX28DRAFT_2593at 2627.925 kb on - strand, within EX28DRAFT_2593at 2627.925 kb on - strand, within EX28DRAFT_2593at 2627.925 kb on - strand, within EX28DRAFT_2593at 2627.973 kb on + strand, within EX28DRAFT_2593at 2627.979 kb on + strand, within EX28DRAFT_2593at 2628.005 kb on + strand, within EX28DRAFT_2593at 2628.005 kb on + strand, within EX28DRAFT_2593at 2628.008 kb on + strand, within EX28DRAFT_2593at 2628.141 kb on - strandat 2628.262 kb on + strandat 2628.266 kb on - strandat 2628.278 kb on + strandat 2628.278 kb on + strandat 2628.306 kb on + strandat 2628.306 kb on + strandat 2628.417 kb on + strand, within EX28DRAFT_2594at 2628.417 kb on + strand, within EX28DRAFT_2594at 2628.418 kb on - strand, within EX28DRAFT_2594at 2628.543 kb on + strand, within EX28DRAFT_2594at 2628.544 kb on - strand, within EX28DRAFT_2594at 2628.754 kb on + strand, within EX28DRAFT_2595at 2628.754 kb on + strand, within EX28DRAFT_2595at 2628.840 kb on + strand, within EX28DRAFT_2595at 2628.971 kb on - strand, within EX28DRAFT_2595at 2629.015 kb on + strand, within EX28DRAFT_2595at 2629.015 kb on + strand, within EX28DRAFT_2595at 2629.016 kb on - strand, within EX28DRAFT_2595at 2629.042 kb on + strand, within EX28DRAFT_2595at 2629.217 kb on + strand, within EX28DRAFT_2595at 2629.217 kb on + strand, within EX28DRAFT_2595at 2629.218 kb on - strand, within EX28DRAFT_2595at 2629.286 kb on - strand, within EX28DRAFT_2595at 2629.344 kb on - strand, within EX28DRAFT_2595at 2629.420 kb on + strand, within EX28DRAFT_2595at 2629.420 kb on + strand, within EX28DRAFT_2595at 2629.461 kb on - strand, within EX28DRAFT_2595

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
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2,627,369 - EX28DRAFT_2592 0.59 +1.3
2,627,389 + EX28DRAFT_2592 0.61 -0.3
2,627,393 - EX28DRAFT_2592 0.61 +0.7
2,627,393 - EX28DRAFT_2592 0.61 -0.6
2,627,466 + EX28DRAFT_2592 0.68 -3.1
2,627,467 - EX28DRAFT_2592 0.68 +0.6
2,627,467 - EX28DRAFT_2592 0.68 +0.0
2,627,487 - EX28DRAFT_2592 0.70 -5.2
2,627,498 + EX28DRAFT_2592 0.71 -0.2
2,627,498 + EX28DRAFT_2592 0.71 -0.1
2,627,498 + EX28DRAFT_2592 0.71 +0.2
2,627,499 - EX28DRAFT_2592 0.71 +0.5
2,627,499 - EX28DRAFT_2592 0.71 +0.5
2,627,499 - EX28DRAFT_2592 0.71 -0.5
2,627,560 + EX28DRAFT_2592 0.76 +1.0
2,627,690 - EX28DRAFT_2592 0.88 +0.2
2,627,924 + EX28DRAFT_2593 0.46 +0.9
2,627,925 - EX28DRAFT_2593 0.47 -1.8
2,627,925 - EX28DRAFT_2593 0.47 +0.6
2,627,925 - EX28DRAFT_2593 0.47 +1.6
2,627,973 + EX28DRAFT_2593 0.68 -0.3
2,627,979 + EX28DRAFT_2593 0.71 -2.3
2,628,005 + EX28DRAFT_2593 0.82 +0.3
2,628,005 + EX28DRAFT_2593 0.82 +1.9
2,628,008 + EX28DRAFT_2593 0.83 +0.2
2,628,141 - +0.0
2,628,262 + +0.6
2,628,266 - +0.5
2,628,278 + -0.1
2,628,278 + +0.1
2,628,306 + -0.0
2,628,306 + +0.5
2,628,417 + EX28DRAFT_2594 0.41 +0.2
2,628,417 + EX28DRAFT_2594 0.41 +0.2
2,628,418 - EX28DRAFT_2594 0.41 +0.8
2,628,543 + EX28DRAFT_2594 0.83 +0.1
2,628,544 - EX28DRAFT_2594 0.83 +0.4
2,628,754 + EX28DRAFT_2595 0.15 -0.6
2,628,754 + EX28DRAFT_2595 0.15 -0.2
2,628,840 + EX28DRAFT_2595 0.23 +1.5
2,628,971 - EX28DRAFT_2595 0.35 -2.1
2,629,015 + EX28DRAFT_2595 0.39 -1.1
2,629,015 + EX28DRAFT_2595 0.39 -0.8
2,629,016 - EX28DRAFT_2595 0.39 -0.1
2,629,042 + EX28DRAFT_2595 0.41 +0.5
2,629,217 + EX28DRAFT_2595 0.57 -2.4
2,629,217 + EX28DRAFT_2595 0.57 +0.5
2,629,218 - EX28DRAFT_2595 0.57 -0.1
2,629,286 - EX28DRAFT_2595 0.63 -0.2
2,629,344 - EX28DRAFT_2595 0.69 -0.4
2,629,420 + EX28DRAFT_2595 0.76 -0.2
2,629,420 + EX28DRAFT_2595 0.76 +1.6
2,629,461 - EX28DRAFT_2595 0.79 +0.2

Or see this region's nucleotide sequence