Experiment: M9 with sucrose and trichloroethylene 76.3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2592 and EX28DRAFT_2593 overlap by 4 nucleotides EX28DRAFT_2593 and EX28DRAFT_2594 are separated by 249 nucleotides EX28DRAFT_2594 and EX28DRAFT_2595 overlap by 4 nucleotides
EX28DRAFT_2592: EX28DRAFT_2592 - D-alanine--D-alanine ligase, at 2,626,721 to 2,627,821
_2592
EX28DRAFT_2593: EX28DRAFT_2593 - Protein of unknown function (DUF2754), at 2,627,818 to 2,628,045
_2593
EX28DRAFT_2594: EX28DRAFT_2594 - Protein of unknown function (DUF2755), at 2,628,295 to 2,628,594
_2594
EX28DRAFT_2595: EX28DRAFT_2595 - Protein of unknown function (DUF1615), at 2,628,591 to 2,629,688
_2595
Position (kb)
2628
2629 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 2627.369 kb on - strand, within EX28DRAFT_2592 at 2627.389 kb on + strand, within EX28DRAFT_2592 at 2627.393 kb on - strand, within EX28DRAFT_2592 at 2627.393 kb on - strand, within EX28DRAFT_2592 at 2627.466 kb on + strand, within EX28DRAFT_2592 at 2627.467 kb on - strand, within EX28DRAFT_2592 at 2627.467 kb on - strand, within EX28DRAFT_2592 at 2627.487 kb on - strand, within EX28DRAFT_2592 at 2627.498 kb on + strand, within EX28DRAFT_2592 at 2627.498 kb on + strand, within EX28DRAFT_2592 at 2627.498 kb on + strand, within EX28DRAFT_2592 at 2627.499 kb on - strand, within EX28DRAFT_2592 at 2627.499 kb on - strand, within EX28DRAFT_2592 at 2627.499 kb on - strand, within EX28DRAFT_2592 at 2627.560 kb on + strand, within EX28DRAFT_2592 at 2627.690 kb on - strand, within EX28DRAFT_2592 at 2627.924 kb on + strand, within EX28DRAFT_2593 at 2627.925 kb on - strand, within EX28DRAFT_2593 at 2627.925 kb on - strand, within EX28DRAFT_2593 at 2627.925 kb on - strand, within EX28DRAFT_2593 at 2627.973 kb on + strand, within EX28DRAFT_2593 at 2627.979 kb on + strand, within EX28DRAFT_2593 at 2628.005 kb on + strand, within EX28DRAFT_2593 at 2628.005 kb on + strand, within EX28DRAFT_2593 at 2628.008 kb on + strand, within EX28DRAFT_2593 at 2628.141 kb on - strand at 2628.262 kb on + strand at 2628.266 kb on - strand at 2628.278 kb on + strand at 2628.278 kb on + strand at 2628.306 kb on + strand at 2628.306 kb on + strand at 2628.417 kb on + strand, within EX28DRAFT_2594 at 2628.417 kb on + strand, within EX28DRAFT_2594 at 2628.418 kb on - strand, within EX28DRAFT_2594 at 2628.543 kb on + strand, within EX28DRAFT_2594 at 2628.544 kb on - strand, within EX28DRAFT_2594 at 2628.754 kb on + strand, within EX28DRAFT_2595 at 2628.754 kb on + strand, within EX28DRAFT_2595 at 2628.840 kb on + strand, within EX28DRAFT_2595 at 2628.971 kb on - strand, within EX28DRAFT_2595 at 2629.015 kb on + strand, within EX28DRAFT_2595 at 2629.015 kb on + strand, within EX28DRAFT_2595 at 2629.016 kb on - strand, within EX28DRAFT_2595 at 2629.042 kb on + strand, within EX28DRAFT_2595 at 2629.217 kb on + strand, within EX28DRAFT_2595 at 2629.217 kb on + strand, within EX28DRAFT_2595 at 2629.218 kb on - strand, within EX28DRAFT_2595 at 2629.286 kb on - strand, within EX28DRAFT_2595 at 2629.344 kb on - strand, within EX28DRAFT_2595 at 2629.420 kb on + strand, within EX28DRAFT_2595 at 2629.420 kb on + strand, within EX28DRAFT_2595 at 2629.461 kb on - strand, within EX28DRAFT_2595
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM remove 2,627,369 - EX28DRAFT_2592 0.59 +1.3 2,627,389 + EX28DRAFT_2592 0.61 -0.3 2,627,393 - EX28DRAFT_2592 0.61 +0.7 2,627,393 - EX28DRAFT_2592 0.61 -0.6 2,627,466 + EX28DRAFT_2592 0.68 -3.1 2,627,467 - EX28DRAFT_2592 0.68 +0.6 2,627,467 - EX28DRAFT_2592 0.68 +0.0 2,627,487 - EX28DRAFT_2592 0.70 -5.2 2,627,498 + EX28DRAFT_2592 0.71 -0.2 2,627,498 + EX28DRAFT_2592 0.71 -0.1 2,627,498 + EX28DRAFT_2592 0.71 +0.2 2,627,499 - EX28DRAFT_2592 0.71 +0.5 2,627,499 - EX28DRAFT_2592 0.71 +0.5 2,627,499 - EX28DRAFT_2592 0.71 -0.5 2,627,560 + EX28DRAFT_2592 0.76 +1.0 2,627,690 - EX28DRAFT_2592 0.88 +0.2 2,627,924 + EX28DRAFT_2593 0.46 +0.9 2,627,925 - EX28DRAFT_2593 0.47 -1.8 2,627,925 - EX28DRAFT_2593 0.47 +0.6 2,627,925 - EX28DRAFT_2593 0.47 +1.6 2,627,973 + EX28DRAFT_2593 0.68 -0.3 2,627,979 + EX28DRAFT_2593 0.71 -2.3 2,628,005 + EX28DRAFT_2593 0.82 +0.3 2,628,005 + EX28DRAFT_2593 0.82 +1.9 2,628,008 + EX28DRAFT_2593 0.83 +0.2 2,628,141 - +0.0 2,628,262 + +0.6 2,628,266 - +0.5 2,628,278 + -0.1 2,628,278 + +0.1 2,628,306 + -0.0 2,628,306 + +0.5 2,628,417 + EX28DRAFT_2594 0.41 +0.2 2,628,417 + EX28DRAFT_2594 0.41 +0.2 2,628,418 - EX28DRAFT_2594 0.41 +0.8 2,628,543 + EX28DRAFT_2594 0.83 +0.1 2,628,544 - EX28DRAFT_2594 0.83 +0.4 2,628,754 + EX28DRAFT_2595 0.15 -0.6 2,628,754 + EX28DRAFT_2595 0.15 -0.2 2,628,840 + EX28DRAFT_2595 0.23 +1.5 2,628,971 - EX28DRAFT_2595 0.35 -2.1 2,629,015 + EX28DRAFT_2595 0.39 -1.1 2,629,015 + EX28DRAFT_2595 0.39 -0.8 2,629,016 - EX28DRAFT_2595 0.39 -0.1 2,629,042 + EX28DRAFT_2595 0.41 +0.5 2,629,217 + EX28DRAFT_2595 0.57 -2.4 2,629,217 + EX28DRAFT_2595 0.57 +0.5 2,629,218 - EX28DRAFT_2595 0.57 -0.1 2,629,286 - EX28DRAFT_2595 0.63 -0.2 2,629,344 - EX28DRAFT_2595 0.69 -0.4 2,629,420 + EX28DRAFT_2595 0.76 -0.2 2,629,420 + EX28DRAFT_2595 0.76 +1.6 2,629,461 - EX28DRAFT_2595 0.79 +0.2
Or see this region's nucleotide sequence