Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2390

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2388 and EX28DRAFT_2389 are separated by 143 nucleotidesEX28DRAFT_2389 and EX28DRAFT_2390 are separated by 43 nucleotidesEX28DRAFT_2390 and EX28DRAFT_2391 overlap by 4 nucleotidesEX28DRAFT_2391 and EX28DRAFT_2392 are separated by 328 nucleotides EX28DRAFT_2388: EX28DRAFT_2388 - choline dehydrogenase, at 2,413,545 to 2,415,209 _2388 EX28DRAFT_2389: EX28DRAFT_2389 - Secreted and surface protein containing fasciclin-like repeats, at 2,415,353 to 2,415,916 _2389 EX28DRAFT_2390: EX28DRAFT_2390 - RNA polymerase sigma factor, sigma-70 family, at 2,415,960 to 2,416,514 _2390 EX28DRAFT_2391: EX28DRAFT_2391 - Uncharacterized protein conserved in bacteria, at 2,416,511 to 2,417,158 _2391 EX28DRAFT_2392: EX28DRAFT_2392 - Short-chain alcohol dehydrogenase of unknown specificity, at 2,417,487 to 2,418,227 _2392 Position (kb) 2415 2416 2417Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 2415.105 kb on - strandat 2415.108 kb on - strandat 2415.174 kb on + strandat 2415.177 kb on + strandat 2415.177 kb on + strandat 2415.177 kb on + strandat 2415.178 kb on - strandat 2415.178 kb on - strandat 2415.265 kb on - strandat 2415.304 kb on + strandat 2415.304 kb on + strandat 2415.304 kb on + strandat 2415.304 kb on + strandat 2415.312 kb on + strandat 2415.313 kb on - strandat 2415.347 kb on + strandat 2415.348 kb on - strandat 2415.550 kb on + strand, within EX28DRAFT_2389at 2415.652 kb on + strand, within EX28DRAFT_2389at 2415.671 kb on - strand, within EX28DRAFT_2389at 2415.680 kb on + strand, within EX28DRAFT_2389at 2415.680 kb on + strand, within EX28DRAFT_2389at 2415.681 kb on - strand, within EX28DRAFT_2389at 2415.701 kb on + strand, within EX28DRAFT_2389at 2415.702 kb on - strand, within EX28DRAFT_2389at 2415.702 kb on - strand, within EX28DRAFT_2389at 2415.702 kb on - strand, within EX28DRAFT_2389at 2415.854 kb on + strand, within EX28DRAFT_2389at 2415.855 kb on - strand, within EX28DRAFT_2389at 2415.855 kb on - strand, within EX28DRAFT_2389at 2415.855 kb on - strand, within EX28DRAFT_2389at 2415.910 kb on + strandat 2415.910 kb on + strandat 2415.914 kb on + strandat 2415.915 kb on - strandat 2415.922 kb on + strandat 2415.925 kb on - strandat 2416.159 kb on - strand, within EX28DRAFT_2390at 2416.199 kb on + strand, within EX28DRAFT_2390at 2416.200 kb on - strand, within EX28DRAFT_2390at 2416.217 kb on + strand, within EX28DRAFT_2390at 2416.218 kb on - strand, within EX28DRAFT_2390at 2416.270 kb on - strand, within EX28DRAFT_2390at 2416.554 kb on - strandat 2416.763 kb on + strand, within EX28DRAFT_2391at 2416.978 kb on + strand, within EX28DRAFT_2391at 2416.979 kb on - strand, within EX28DRAFT_2391at 2416.979 kb on - strand, within EX28DRAFT_2391at 2417.027 kb on - strand, within EX28DRAFT_2391at 2417.028 kb on + strand, within EX28DRAFT_2391at 2417.028 kb on + strand, within EX28DRAFT_2391at 2417.028 kb on + strand, within EX28DRAFT_2391at 2417.141 kb on + strandat 2417.194 kb on - strandat 2417.261 kb on - strandat 2417.267 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
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2,415,105 - -0.2
2,415,108 - +0.3
2,415,174 + -0.4
2,415,177 + -0.1
2,415,177 + +0.6
2,415,177 + -1.4
2,415,178 - -4.2
2,415,178 - -0.6
2,415,265 - +0.6
2,415,304 + +0.0
2,415,304 + +0.1
2,415,304 + +0.4
2,415,304 + -0.5
2,415,312 + -0.5
2,415,313 - -2.7
2,415,347 + +0.3
2,415,348 - -0.7
2,415,550 + EX28DRAFT_2389 0.35 +0.9
2,415,652 + EX28DRAFT_2389 0.53 -4.9
2,415,671 - EX28DRAFT_2389 0.56 -1.0
2,415,680 + EX28DRAFT_2389 0.58 -0.9
2,415,680 + EX28DRAFT_2389 0.58 -1.2
2,415,681 - EX28DRAFT_2389 0.58 -0.1
2,415,701 + EX28DRAFT_2389 0.62 -0.8
2,415,702 - EX28DRAFT_2389 0.62 +0.0
2,415,702 - EX28DRAFT_2389 0.62 -0.2
2,415,702 - EX28DRAFT_2389 0.62 -1.7
2,415,854 + EX28DRAFT_2389 0.89 -2.2
2,415,855 - EX28DRAFT_2389 0.89 -0.2
2,415,855 - EX28DRAFT_2389 0.89 +0.3
2,415,855 - EX28DRAFT_2389 0.89 -0.5
2,415,910 + +0.0
2,415,910 + +1.2
2,415,914 + +0.3
2,415,915 - -1.6
2,415,922 + -1.2
2,415,925 - +0.3
2,416,159 - EX28DRAFT_2390 0.36 -3.2
2,416,199 + EX28DRAFT_2390 0.43 -1.2
2,416,200 - EX28DRAFT_2390 0.43 -0.5
2,416,217 + EX28DRAFT_2390 0.46 -1.0
2,416,218 - EX28DRAFT_2390 0.46 -0.4
2,416,270 - EX28DRAFT_2390 0.56 -0.6
2,416,554 - +0.7
2,416,763 + EX28DRAFT_2391 0.39 -1.0
2,416,978 + EX28DRAFT_2391 0.72 -1.4
2,416,979 - EX28DRAFT_2391 0.72 +0.6
2,416,979 - EX28DRAFT_2391 0.72 +0.3
2,417,027 - EX28DRAFT_2391 0.80 +0.6
2,417,028 + EX28DRAFT_2391 0.80 -1.1
2,417,028 + EX28DRAFT_2391 0.80 +0.5
2,417,028 + EX28DRAFT_2391 0.80 -0.1
2,417,141 + +1.1
2,417,194 - -0.2
2,417,261 - -1.8
2,417,267 + -0.5

Or see this region's nucleotide sequence