Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2200

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2199 and EX28DRAFT_2200 overlap by 39 nucleotidesEX28DRAFT_2200 and EX28DRAFT_2201 are separated by 133 nucleotidesEX28DRAFT_2201 and EX28DRAFT_2202 overlap by 4 nucleotides EX28DRAFT_2199: EX28DRAFT_2199 - ABC-type multidrug transport system, permease component, at 2,223,636 to 2,224,742 _2199 EX28DRAFT_2200: EX28DRAFT_2200 - Putative inner membrane protein YbhQ, at 2,224,704 to 2,225,114 _2200 EX28DRAFT_2201: EX28DRAFT_2201 - Metal-dependent hydrolase, at 2,225,248 to 2,226,009 _2201 EX28DRAFT_2202: EX28DRAFT_2202 - Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes, at 2,226,006 to 2,227,244 _2202 Position (kb) 2224 2225 2226Strain fitness (log2 ratio) -3 -2 -1 0 1at 2224.007 kb on + strand, within EX28DRAFT_2199at 2224.038 kb on + strand, within EX28DRAFT_2199at 2224.039 kb on - strand, within EX28DRAFT_2199at 2224.128 kb on + strand, within EX28DRAFT_2199at 2224.129 kb on - strand, within EX28DRAFT_2199at 2224.146 kb on + strand, within EX28DRAFT_2199at 2224.146 kb on + strand, within EX28DRAFT_2199at 2224.147 kb on - strand, within EX28DRAFT_2199at 2224.508 kb on + strand, within EX28DRAFT_2199at 2224.537 kb on - strand, within EX28DRAFT_2199at 2224.608 kb on - strand, within EX28DRAFT_2199at 2224.874 kb on - strand, within EX28DRAFT_2200at 2224.874 kb on - strand, within EX28DRAFT_2200at 2224.941 kb on + strand, within EX28DRAFT_2200at 2224.941 kb on + strand, within EX28DRAFT_2200at 2225.061 kb on + strand, within EX28DRAFT_2200at 2225.214 kb on - strandat 2225.247 kb on + strandat 2225.247 kb on + strandat 2225.248 kb on - strandat 2225.248 kb on - strandat 2225.277 kb on + strandat 2225.301 kb on + strandat 2225.455 kb on + strand, within EX28DRAFT_2201at 2225.908 kb on + strand, within EX28DRAFT_2201at 2225.909 kb on - strand, within EX28DRAFT_2201at 2225.909 kb on - strand, within EX28DRAFT_2201at 2226.006 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
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2,224,007 + EX28DRAFT_2199 0.34 -0.1
2,224,038 + EX28DRAFT_2199 0.36 +1.6
2,224,039 - EX28DRAFT_2199 0.36 -0.3
2,224,128 + EX28DRAFT_2199 0.44 -3.1
2,224,129 - EX28DRAFT_2199 0.45 -0.3
2,224,146 + EX28DRAFT_2199 0.46 +0.0
2,224,146 + EX28DRAFT_2199 0.46 -0.5
2,224,147 - EX28DRAFT_2199 0.46 +0.3
2,224,508 + EX28DRAFT_2199 0.79 +1.4
2,224,537 - EX28DRAFT_2199 0.81 -0.2
2,224,608 - EX28DRAFT_2199 0.88 -0.4
2,224,874 - EX28DRAFT_2200 0.41 -2.1
2,224,874 - EX28DRAFT_2200 0.41 +0.4
2,224,941 + EX28DRAFT_2200 0.58 -1.9
2,224,941 + EX28DRAFT_2200 0.58 +0.0
2,225,061 + EX28DRAFT_2200 0.87 -0.4
2,225,214 - -0.8
2,225,247 + +0.2
2,225,247 + -0.2
2,225,248 - +0.7
2,225,248 - -1.5
2,225,277 + +0.1
2,225,301 + +0.7
2,225,455 + EX28DRAFT_2201 0.27 -0.5
2,225,908 + EX28DRAFT_2201 0.87 -0.4
2,225,909 - EX28DRAFT_2201 0.87 -0.0
2,225,909 - EX28DRAFT_2201 0.87 -0.8
2,226,006 - +0.8

Or see this region's nucleotide sequence