Experiment: M9 with sucrose and trichloroethylene 76.3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2187 and EX28DRAFT_2188 are separated by 266 nucleotides EX28DRAFT_2188 and EX28DRAFT_2189 are separated by 68 nucleotides EX28DRAFT_2189 and EX28DRAFT_2190 are separated by 25 nucleotides
EX28DRAFT_2187: EX28DRAFT_2187 - Anthranilate phosphoribosyltransferase, at 2,208,657 to 2,209,619
_2187
EX28DRAFT_2188: EX28DRAFT_2188 - P pilus assembly protein, pilin FimA, at 2,209,886 to 2,210,422
_2188
EX28DRAFT_2189: EX28DRAFT_2189 - P pilus assembly protein, chaperone PapD, at 2,210,491 to 2,211,165
_2189
EX28DRAFT_2190: EX28DRAFT_2190 - P pilus assembly protein, porin PapC, at 2,211,191 to 2,213,734
_2190
Position (kb)
2209
2210
2211 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2208.969 kb on - strand, within EX28DRAFT_2187 at 2209.154 kb on + strand, within EX28DRAFT_2187 at 2209.156 kb on + strand, within EX28DRAFT_2187 at 2209.157 kb on - strand, within EX28DRAFT_2187 at 2209.209 kb on - strand, within EX28DRAFT_2187 at 2209.358 kb on - strand, within EX28DRAFT_2187 at 2209.424 kb on + strand, within EX28DRAFT_2187 at 2209.424 kb on + strand, within EX28DRAFT_2187 at 2209.432 kb on + strand, within EX28DRAFT_2187 at 2209.433 kb on - strand, within EX28DRAFT_2187 at 2209.535 kb on - strand at 2209.652 kb on - strand at 2209.909 kb on - strand at 2209.976 kb on - strand, within EX28DRAFT_2188 at 2210.188 kb on + strand, within EX28DRAFT_2188 at 2210.277 kb on + strand, within EX28DRAFT_2188 at 2210.277 kb on + strand, within EX28DRAFT_2188 at 2210.277 kb on + strand, within EX28DRAFT_2188 at 2210.278 kb on - strand, within EX28DRAFT_2188 at 2210.299 kb on + strand, within EX28DRAFT_2188 at 2210.299 kb on + strand, within EX28DRAFT_2188 at 2210.405 kb on - strand at 2210.465 kb on - strand at 2210.507 kb on + strand at 2210.631 kb on + strand, within EX28DRAFT_2189 at 2210.805 kb on + strand, within EX28DRAFT_2189 at 2210.844 kb on + strand, within EX28DRAFT_2189 at 2210.952 kb on + strand, within EX28DRAFT_2189 at 2210.986 kb on + strand, within EX28DRAFT_2189 at 2210.987 kb on - strand, within EX28DRAFT_2189 at 2211.054 kb on + strand, within EX28DRAFT_2189 at 2211.055 kb on - strand, within EX28DRAFT_2189 at 2211.171 kb on + strand at 2211.171 kb on + strand at 2211.195 kb on - strand at 2211.195 kb on - strand at 2211.195 kb on - strand at 2211.205 kb on + strand at 2211.206 kb on - strand at 2211.216 kb on + strand at 2211.296 kb on + strand at 2211.297 kb on - strand at 2211.302 kb on - strand at 2211.392 kb on + strand at 2211.393 kb on - strand at 2211.421 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM remove 2,208,969 - EX28DRAFT_2187 0.32 -0.2 2,209,154 + EX28DRAFT_2187 0.52 +0.1 2,209,156 + EX28DRAFT_2187 0.52 -0.1 2,209,157 - EX28DRAFT_2187 0.52 -0.9 2,209,209 - EX28DRAFT_2187 0.57 +0.5 2,209,358 - EX28DRAFT_2187 0.73 -1.2 2,209,424 + EX28DRAFT_2187 0.80 -0.8 2,209,424 + EX28DRAFT_2187 0.80 +0.5 2,209,432 + EX28DRAFT_2187 0.80 +0.2 2,209,433 - EX28DRAFT_2187 0.81 -1.6 2,209,535 - -0.4 2,209,652 - -1.4 2,209,909 - +0.9 2,209,976 - EX28DRAFT_2188 0.17 +0.0 2,210,188 + EX28DRAFT_2188 0.56 +1.6 2,210,277 + EX28DRAFT_2188 0.73 -0.0 2,210,277 + EX28DRAFT_2188 0.73 +0.4 2,210,277 + EX28DRAFT_2188 0.73 +1.4 2,210,278 - EX28DRAFT_2188 0.73 +0.2 2,210,299 + EX28DRAFT_2188 0.77 +0.4 2,210,299 + EX28DRAFT_2188 0.77 -0.1 2,210,405 - +1.4 2,210,465 - +0.4 2,210,507 + -2.3 2,210,631 + EX28DRAFT_2189 0.21 +0.6 2,210,805 + EX28DRAFT_2189 0.47 -0.1 2,210,844 + EX28DRAFT_2189 0.52 +0.5 2,210,952 + EX28DRAFT_2189 0.68 -1.6 2,210,986 + EX28DRAFT_2189 0.73 +0.2 2,210,987 - EX28DRAFT_2189 0.73 -0.4 2,211,054 + EX28DRAFT_2189 0.83 -1.9 2,211,055 - EX28DRAFT_2189 0.84 -0.8 2,211,171 + -1.9 2,211,171 + +1.3 2,211,195 - -0.9 2,211,195 - -3.3 2,211,195 - -3.1 2,211,205 + -0.3 2,211,206 - +0.6 2,211,216 + +0.4 2,211,296 + +2.6 2,211,297 - +1.4 2,211,302 - -2.1 2,211,392 + -0.5 2,211,393 - -4.0 2,211,421 + +0.4
Or see this region's nucleotide sequence