Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2188

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2187 and EX28DRAFT_2188 are separated by 266 nucleotidesEX28DRAFT_2188 and EX28DRAFT_2189 are separated by 68 nucleotidesEX28DRAFT_2189 and EX28DRAFT_2190 are separated by 25 nucleotides EX28DRAFT_2187: EX28DRAFT_2187 - Anthranilate phosphoribosyltransferase, at 2,208,657 to 2,209,619 _2187 EX28DRAFT_2188: EX28DRAFT_2188 - P pilus assembly protein, pilin FimA, at 2,209,886 to 2,210,422 _2188 EX28DRAFT_2189: EX28DRAFT_2189 - P pilus assembly protein, chaperone PapD, at 2,210,491 to 2,211,165 _2189 EX28DRAFT_2190: EX28DRAFT_2190 - P pilus assembly protein, porin PapC, at 2,211,191 to 2,213,734 _2190 Position (kb) 2209 2210 2211Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2208.969 kb on - strand, within EX28DRAFT_2187at 2209.154 kb on + strand, within EX28DRAFT_2187at 2209.156 kb on + strand, within EX28DRAFT_2187at 2209.157 kb on - strand, within EX28DRAFT_2187at 2209.209 kb on - strand, within EX28DRAFT_2187at 2209.358 kb on - strand, within EX28DRAFT_2187at 2209.424 kb on + strand, within EX28DRAFT_2187at 2209.424 kb on + strand, within EX28DRAFT_2187at 2209.432 kb on + strand, within EX28DRAFT_2187at 2209.433 kb on - strand, within EX28DRAFT_2187at 2209.535 kb on - strandat 2209.652 kb on - strandat 2209.909 kb on - strandat 2209.976 kb on - strand, within EX28DRAFT_2188at 2210.188 kb on + strand, within EX28DRAFT_2188at 2210.277 kb on + strand, within EX28DRAFT_2188at 2210.277 kb on + strand, within EX28DRAFT_2188at 2210.277 kb on + strand, within EX28DRAFT_2188at 2210.278 kb on - strand, within EX28DRAFT_2188at 2210.299 kb on + strand, within EX28DRAFT_2188at 2210.299 kb on + strand, within EX28DRAFT_2188at 2210.405 kb on - strandat 2210.465 kb on - strandat 2210.507 kb on + strandat 2210.631 kb on + strand, within EX28DRAFT_2189at 2210.805 kb on + strand, within EX28DRAFT_2189at 2210.844 kb on + strand, within EX28DRAFT_2189at 2210.952 kb on + strand, within EX28DRAFT_2189at 2210.986 kb on + strand, within EX28DRAFT_2189at 2210.987 kb on - strand, within EX28DRAFT_2189at 2211.054 kb on + strand, within EX28DRAFT_2189at 2211.055 kb on - strand, within EX28DRAFT_2189at 2211.171 kb on + strandat 2211.171 kb on + strandat 2211.195 kb on - strandat 2211.195 kb on - strandat 2211.195 kb on - strandat 2211.205 kb on + strandat 2211.206 kb on - strandat 2211.216 kb on + strandat 2211.296 kb on + strandat 2211.297 kb on - strandat 2211.302 kb on - strandat 2211.392 kb on + strandat 2211.393 kb on - strandat 2211.421 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
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2,208,969 - EX28DRAFT_2187 0.32 -0.2
2,209,154 + EX28DRAFT_2187 0.52 +0.1
2,209,156 + EX28DRAFT_2187 0.52 -0.1
2,209,157 - EX28DRAFT_2187 0.52 -0.9
2,209,209 - EX28DRAFT_2187 0.57 +0.5
2,209,358 - EX28DRAFT_2187 0.73 -1.2
2,209,424 + EX28DRAFT_2187 0.80 -0.8
2,209,424 + EX28DRAFT_2187 0.80 +0.5
2,209,432 + EX28DRAFT_2187 0.80 +0.2
2,209,433 - EX28DRAFT_2187 0.81 -1.6
2,209,535 - -0.4
2,209,652 - -1.4
2,209,909 - +0.9
2,209,976 - EX28DRAFT_2188 0.17 +0.0
2,210,188 + EX28DRAFT_2188 0.56 +1.6
2,210,277 + EX28DRAFT_2188 0.73 -0.0
2,210,277 + EX28DRAFT_2188 0.73 +0.4
2,210,277 + EX28DRAFT_2188 0.73 +1.4
2,210,278 - EX28DRAFT_2188 0.73 +0.2
2,210,299 + EX28DRAFT_2188 0.77 +0.4
2,210,299 + EX28DRAFT_2188 0.77 -0.1
2,210,405 - +1.4
2,210,465 - +0.4
2,210,507 + -2.3
2,210,631 + EX28DRAFT_2189 0.21 +0.6
2,210,805 + EX28DRAFT_2189 0.47 -0.1
2,210,844 + EX28DRAFT_2189 0.52 +0.5
2,210,952 + EX28DRAFT_2189 0.68 -1.6
2,210,986 + EX28DRAFT_2189 0.73 +0.2
2,210,987 - EX28DRAFT_2189 0.73 -0.4
2,211,054 + EX28DRAFT_2189 0.83 -1.9
2,211,055 - EX28DRAFT_2189 0.84 -0.8
2,211,171 + -1.9
2,211,171 + +1.3
2,211,195 - -0.9
2,211,195 - -3.3
2,211,195 - -3.1
2,211,205 + -0.3
2,211,206 - +0.6
2,211,216 + +0.4
2,211,296 + +2.6
2,211,297 - +1.4
2,211,302 - -2.1
2,211,392 + -0.5
2,211,393 - -4.0
2,211,421 + +0.4

Or see this region's nucleotide sequence