Experiment: M9 with sucrose and trichloroethylene 76.3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2072 and EX28DRAFT_2073 overlap by 4 nucleotides EX28DRAFT_2073 and EX28DRAFT_2074 overlap by 8 nucleotides EX28DRAFT_2074 and EX28DRAFT_2075 overlap by 8 nucleotides EX28DRAFT_2075 and EX28DRAFT_2076 overlap by 1 nucleotides EX28DRAFT_2076 and EX28DRAFT_2077 are separated by 2 nucleotides
EX28DRAFT_2072: EX28DRAFT_2072 - Type II secretory pathway, component PulK, at 2,098,264 to 2,099,283
_2072
EX28DRAFT_2073: EX28DRAFT_2073 - type II secretion system protein J, at 2,099,280 to 2,099,960
_2073
EX28DRAFT_2074: EX28DRAFT_2074 - type II secretion system protein I, at 2,099,953 to 2,100,336
_2074
EX28DRAFT_2075: EX28DRAFT_2075 - type II secretion system protein H, at 2,100,329 to 2,100,814
_2075
EX28DRAFT_2076: EX28DRAFT_2076 - type II secretion system protein G, at 2,100,814 to 2,101,263
_2076
EX28DRAFT_2077: EX28DRAFT_2077 - type II secretion system protein F, at 2,101,266 to 2,102,474
_2077
Position (kb)
2099
2100
2101 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2099.003 kb on + strand, within EX28DRAFT_2072 at 2099.003 kb on + strand, within EX28DRAFT_2072 at 2099.003 kb on + strand, within EX28DRAFT_2072 at 2099.004 kb on - strand, within EX28DRAFT_2072 at 2099.004 kb on - strand, within EX28DRAFT_2072 at 2099.004 kb on - strand, within EX28DRAFT_2072 at 2099.007 kb on + strand, within EX28DRAFT_2072 at 2099.154 kb on - strand, within EX28DRAFT_2072 at 2099.424 kb on - strand, within EX28DRAFT_2073 at 2099.424 kb on - strand, within EX28DRAFT_2073 at 2099.768 kb on - strand, within EX28DRAFT_2073 at 2099.791 kb on + strand, within EX28DRAFT_2073 at 2099.792 kb on - strand, within EX28DRAFT_2073 at 2099.916 kb on - strand at 2099.916 kb on - strand at 2099.916 kb on - strand at 2100.031 kb on + strand, within EX28DRAFT_2074 at 2100.076 kb on - strand, within EX28DRAFT_2074 at 2100.330 kb on + strand at 2100.555 kb on - strand, within EX28DRAFT_2075 at 2100.703 kb on + strand, within EX28DRAFT_2075 at 2100.762 kb on - strand, within EX28DRAFT_2075 at 2100.861 kb on + strand, within EX28DRAFT_2076 at 2100.864 kb on + strand, within EX28DRAFT_2076 at 2101.077 kb on - strand, within EX28DRAFT_2076 at 2101.077 kb on - strand, within EX28DRAFT_2076 at 2101.197 kb on + strand, within EX28DRAFT_2076 at 2101.277 kb on + strand at 2101.277 kb on + strand at 2101.284 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM remove 2,099,003 + EX28DRAFT_2072 0.72 -2.1 2,099,003 + EX28DRAFT_2072 0.72 +1.8 2,099,003 + EX28DRAFT_2072 0.72 -0.5 2,099,004 - EX28DRAFT_2072 0.73 -0.1 2,099,004 - EX28DRAFT_2072 0.73 +0.2 2,099,004 - EX28DRAFT_2072 0.73 -0.1 2,099,007 + EX28DRAFT_2072 0.73 +0.5 2,099,154 - EX28DRAFT_2072 0.87 +1.1 2,099,424 - EX28DRAFT_2073 0.21 +0.5 2,099,424 - EX28DRAFT_2073 0.21 +0.9 2,099,768 - EX28DRAFT_2073 0.72 +0.3 2,099,791 + EX28DRAFT_2073 0.75 -0.0 2,099,792 - EX28DRAFT_2073 0.75 -0.6 2,099,916 - -0.3 2,099,916 - -0.0 2,099,916 - -0.0 2,100,031 + EX28DRAFT_2074 0.20 -0.6 2,100,076 - EX28DRAFT_2074 0.32 +1.0 2,100,330 + -0.1 2,100,555 - EX28DRAFT_2075 0.47 -1.2 2,100,703 + EX28DRAFT_2075 0.77 -0.3 2,100,762 - EX28DRAFT_2075 0.89 -2.3 2,100,861 + EX28DRAFT_2076 0.10 +0.0 2,100,864 + EX28DRAFT_2076 0.11 +0.2 2,101,077 - EX28DRAFT_2076 0.58 +0.5 2,101,077 - EX28DRAFT_2076 0.58 -0.5 2,101,197 + EX28DRAFT_2076 0.85 +0.8 2,101,277 + +0.4 2,101,277 + +0.9 2,101,284 - +0.3
Or see this region's nucleotide sequence