Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1844

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1841 and EX28DRAFT_1842 are separated by 36 nucleotidesEX28DRAFT_1842 and EX28DRAFT_1843 are separated by 35 nucleotidesEX28DRAFT_1843 and EX28DRAFT_1844 are separated by 66 nucleotidesEX28DRAFT_1844 and EX28DRAFT_1845 are separated by 212 nucleotidesEX28DRAFT_1845 and EX28DRAFT_1846 are separated by 24 nucleotides EX28DRAFT_1841: EX28DRAFT_1841 - Predicted metal-binding, possibly nucleic acid-binding protein, at 1,856,986 to 1,857,507 _1841 EX28DRAFT_1842: EX28DRAFT_1842 - RNA, at 1,857,544 to 1,857,654 _1842 EX28DRAFT_1843: EX28DRAFT_1843 - MAF protein, at 1,857,690 to 1,858,232 _1843 EX28DRAFT_1844: EX28DRAFT_1844 - pseudouridine synthase, RluA family, at 1,858,299 to 1,859,246 _1844 EX28DRAFT_1845: EX28DRAFT_1845 - RNA, at 1,859,459 to 1,859,794 _1845 EX28DRAFT_1846: EX28DRAFT_1846 - ribonuclease, Rne/Rng family, at 1,859,819 to 1,862,947 _1846 Position (kb) 1858 1859 1860Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1857.430 kb on - strand, within EX28DRAFT_1841at 1857.538 kb on - strandat 1857.579 kb on + strand, within EX28DRAFT_1842at 1857.602 kb on - strand, within EX28DRAFT_1842at 1857.629 kb on + strand, within EX28DRAFT_1842at 1857.630 kb on - strand, within EX28DRAFT_1842at 1857.632 kb on - strand, within EX28DRAFT_1842at 1857.632 kb on - strand, within EX28DRAFT_1842at 1857.845 kb on - strand, within EX28DRAFT_1843at 1857.955 kb on - strand, within EX28DRAFT_1843at 1857.972 kb on + strand, within EX28DRAFT_1843at 1857.972 kb on + strand, within EX28DRAFT_1843at 1857.973 kb on - strand, within EX28DRAFT_1843at 1857.975 kb on - strand, within EX28DRAFT_1843at 1858.021 kb on + strand, within EX28DRAFT_1843at 1858.022 kb on - strand, within EX28DRAFT_1843at 1858.060 kb on - strand, within EX28DRAFT_1843at 1858.177 kb on + strand, within EX28DRAFT_1843at 1858.275 kb on - strandat 1858.376 kb on + strandat 1858.632 kb on - strand, within EX28DRAFT_1844at 1859.045 kb on + strand, within EX28DRAFT_1844at 1859.263 kb on + strandat 1859.300 kb on + strandat 1859.300 kb on + strandat 1859.301 kb on - strandat 1859.301 kb on - strandat 1859.301 kb on - strandat 1859.301 kb on - strandat 1859.302 kb on + strandat 1859.303 kb on - strandat 1859.306 kb on + strandat 1859.353 kb on + strandat 1859.404 kb on + strandat 1859.484 kb on + strandat 1859.549 kb on + strand, within EX28DRAFT_1845at 1859.697 kb on + strand, within EX28DRAFT_1845

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
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1,857,430 - EX28DRAFT_1841 0.85 -1.5
1,857,538 - -0.2
1,857,579 + EX28DRAFT_1842 0.32 -3.0
1,857,602 - EX28DRAFT_1842 0.52 -0.2
1,857,629 + EX28DRAFT_1842 0.77 -1.2
1,857,630 - EX28DRAFT_1842 0.77 +0.6
1,857,632 - EX28DRAFT_1842 0.79 +0.6
1,857,632 - EX28DRAFT_1842 0.79 +0.4
1,857,845 - EX28DRAFT_1843 0.29 +0.2
1,857,955 - EX28DRAFT_1843 0.49 +0.1
1,857,972 + EX28DRAFT_1843 0.52 -3.0
1,857,972 + EX28DRAFT_1843 0.52 +0.2
1,857,973 - EX28DRAFT_1843 0.52 +2.3
1,857,975 - EX28DRAFT_1843 0.52 +0.1
1,858,021 + EX28DRAFT_1843 0.61 +0.1
1,858,022 - EX28DRAFT_1843 0.61 -1.2
1,858,060 - EX28DRAFT_1843 0.68 +0.3
1,858,177 + EX28DRAFT_1843 0.90 -0.3
1,858,275 - +0.3
1,858,376 + +2.2
1,858,632 - EX28DRAFT_1844 0.35 -1.2
1,859,045 + EX28DRAFT_1844 0.79 -2.2
1,859,263 + -0.4
1,859,300 + -0.4
1,859,300 + +0.8
1,859,301 - -0.8
1,859,301 - +0.3
1,859,301 - +0.9
1,859,301 - +0.2
1,859,302 + +1.1
1,859,303 - +0.8
1,859,306 + -0.3
1,859,353 + -1.7
1,859,404 + -0.3
1,859,484 + +0.8
1,859,549 + EX28DRAFT_1845 0.27 +0.3
1,859,697 + EX28DRAFT_1845 0.71 +0.6

Or see this region's nucleotide sequence