Experiment: M9 with sucrose and trichloroethylene 76.3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1710 and EX28DRAFT_1711 are separated by 44 nucleotides EX28DRAFT_1711 and EX28DRAFT_1712 are separated by 10 nucleotides EX28DRAFT_1712 and EX28DRAFT_1713 are separated by 40 nucleotides
EX28DRAFT_1710: EX28DRAFT_1710 - acetyl-CoA acetyltransferases, at 1,726,025 to 1,727,206
_1710
EX28DRAFT_1711: EX28DRAFT_1711 - H+/gluconate symporter and related permeases, at 1,727,251 to 1,728,642
_1711
EX28DRAFT_1712: EX28DRAFT_1712 - 3-hydroxybutyrate dehydrogenase, at 1,728,653 to 1,729,423
_1712
EX28DRAFT_1713: EX28DRAFT_1713 - Uncharacterized conserved protein, at 1,729,464 to 1,730,906
_1713
Position (kb)
1727
1728
1729 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1726.300 kb on - strand, within EX28DRAFT_1710 at 1726.660 kb on + strand, within EX28DRAFT_1710 at 1726.862 kb on + strand, within EX28DRAFT_1710 at 1727.118 kb on - strand at 1727.227 kb on + strand at 1727.227 kb on + strand at 1727.235 kb on - strand at 1727.320 kb on - strand at 1727.320 kb on - strand at 1727.434 kb on + strand, within EX28DRAFT_1711 at 1727.434 kb on + strand, within EX28DRAFT_1711 at 1727.434 kb on + strand, within EX28DRAFT_1711 at 1727.434 kb on + strand, within EX28DRAFT_1711 at 1727.435 kb on - strand, within EX28DRAFT_1711 at 1727.582 kb on - strand, within EX28DRAFT_1711 at 1727.745 kb on + strand, within EX28DRAFT_1711 at 1727.746 kb on - strand, within EX28DRAFT_1711 at 1727.746 kb on - strand, within EX28DRAFT_1711 at 1727.817 kb on + strand, within EX28DRAFT_1711 at 1727.818 kb on - strand, within EX28DRAFT_1711 at 1727.818 kb on - strand, within EX28DRAFT_1711 at 1727.859 kb on + strand, within EX28DRAFT_1711 at 1727.979 kb on - strand, within EX28DRAFT_1711 at 1728.381 kb on + strand, within EX28DRAFT_1711 at 1728.382 kb on - strand, within EX28DRAFT_1711 at 1728.436 kb on - strand, within EX28DRAFT_1711 at 1728.489 kb on + strand, within EX28DRAFT_1711 at 1728.585 kb on + strand at 1728.724 kb on - strand at 1728.921 kb on + strand, within EX28DRAFT_1712 at 1729.128 kb on + strand, within EX28DRAFT_1712 at 1729.129 kb on - strand, within EX28DRAFT_1712 at 1729.519 kb on + strand at 1729.519 kb on + strand at 1729.520 kb on - strand at 1729.572 kb on + strand at 1729.582 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM remove 1,726,300 - EX28DRAFT_1710 0.23 -1.7 1,726,660 + EX28DRAFT_1710 0.54 +0.5 1,726,862 + EX28DRAFT_1710 0.71 -0.3 1,727,118 - -0.3 1,727,227 + +3.2 1,727,227 + -0.4 1,727,235 - +0.1 1,727,320 - +1.6 1,727,320 - +0.6 1,727,434 + EX28DRAFT_1711 0.13 +0.7 1,727,434 + EX28DRAFT_1711 0.13 -0.2 1,727,434 + EX28DRAFT_1711 0.13 -0.6 1,727,434 + EX28DRAFT_1711 0.13 +0.8 1,727,435 - EX28DRAFT_1711 0.13 -0.7 1,727,582 - EX28DRAFT_1711 0.24 +0.3 1,727,745 + EX28DRAFT_1711 0.35 -1.2 1,727,746 - EX28DRAFT_1711 0.36 -0.2 1,727,746 - EX28DRAFT_1711 0.36 +1.2 1,727,817 + EX28DRAFT_1711 0.41 +0.3 1,727,818 - EX28DRAFT_1711 0.41 -0.2 1,727,818 - EX28DRAFT_1711 0.41 -1.6 1,727,859 + EX28DRAFT_1711 0.44 +0.6 1,727,979 - EX28DRAFT_1711 0.52 +1.1 1,728,381 + EX28DRAFT_1711 0.81 +0.7 1,728,382 - EX28DRAFT_1711 0.81 -1.2 1,728,436 - EX28DRAFT_1711 0.85 +0.0 1,728,489 + EX28DRAFT_1711 0.89 +0.8 1,728,585 + -0.7 1,728,724 - -2.4 1,728,921 + EX28DRAFT_1712 0.35 -0.7 1,729,128 + EX28DRAFT_1712 0.62 -0.4 1,729,129 - EX28DRAFT_1712 0.62 -0.9 1,729,519 + +0.3 1,729,519 + -0.3 1,729,520 - -3.6 1,729,572 + -0.1 1,729,582 + -1.3
Or see this region's nucleotide sequence