Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1698

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_1697 and EX28DRAFT_1698 are separated by 209 nucleotidesEX28DRAFT_1698 and EX28DRAFT_1699 are separated by 166 nucleotidesEX28DRAFT_1699 and EX28DRAFT_1700 are separated by 38 nucleotides EX28DRAFT_1697: EX28DRAFT_1697 - Predicted permease, at 1,710,341 to 1,711,456 _1697 EX28DRAFT_1698: EX28DRAFT_1698 - RNA, at 1,711,666 to 1,711,773 _1698 EX28DRAFT_1699: EX28DRAFT_1699 - hypothetical protein, at 1,711,940 to 1,712,092 _1699 EX28DRAFT_1700: EX28DRAFT_1700 - hypothetical protein, at 1,712,131 to 1,713,297 _1700 Position (kb) 1711 1712Strain fitness (log2 ratio) -3 -2 -1 0 1at 1710.710 kb on + strand, within EX28DRAFT_1697at 1710.892 kb on - strand, within EX28DRAFT_1697at 1711.082 kb on - strand, within EX28DRAFT_1697at 1711.138 kb on + strand, within EX28DRAFT_1697at 1711.203 kb on + strand, within EX28DRAFT_1697at 1711.204 kb on - strand, within EX28DRAFT_1697at 1711.581 kb on - strandat 1711.584 kb on - strandat 1711.660 kb on + strandat 1711.661 kb on - strandat 1711.661 kb on - strandat 1711.691 kb on + strand, within EX28DRAFT_1698at 1711.692 kb on - strand, within EX28DRAFT_1698at 1711.693 kb on + strand, within EX28DRAFT_1698at 1711.820 kb on + strandat 1711.900 kb on - strandat 1711.999 kb on + strand, within EX28DRAFT_1699at 1711.999 kb on + strand, within EX28DRAFT_1699at 1712.000 kb on - strand, within EX28DRAFT_1699at 1712.000 kb on - strand, within EX28DRAFT_1699at 1712.122 kb on - strandat 1712.214 kb on - strandat 1712.530 kb on - strand, within EX28DRAFT_1700

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
remove
1,710,710 + EX28DRAFT_1697 0.33 -0.1
1,710,892 - EX28DRAFT_1697 0.49 +0.3
1,711,082 - EX28DRAFT_1697 0.66 -1.2
1,711,138 + EX28DRAFT_1697 0.71 -0.2
1,711,203 + EX28DRAFT_1697 0.77 +0.3
1,711,204 - EX28DRAFT_1697 0.77 -0.6
1,711,581 - -0.8
1,711,584 - +1.2
1,711,660 + -3.0
1,711,661 - +0.2
1,711,661 - -1.8
1,711,691 + EX28DRAFT_1698 0.23 -0.0
1,711,692 - EX28DRAFT_1698 0.24 -0.1
1,711,693 + EX28DRAFT_1698 0.25 +0.6
1,711,820 + +0.2
1,711,900 - -1.2
1,711,999 + EX28DRAFT_1699 0.39 -2.0
1,711,999 + EX28DRAFT_1699 0.39 +0.1
1,712,000 - EX28DRAFT_1699 0.39 -2.8
1,712,000 - EX28DRAFT_1699 0.39 -0.5
1,712,122 - -0.3
1,712,214 - +0.5
1,712,530 - EX28DRAFT_1700 0.34 +0.7

Or see this region's nucleotide sequence