Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1652

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1650 and EX28DRAFT_1651 are separated by 44 nucleotidesEX28DRAFT_1651 and EX28DRAFT_1652 are separated by 338 nucleotidesEX28DRAFT_1652 and EX28DRAFT_1653 are separated by 122 nucleotidesEX28DRAFT_1653 and EX28DRAFT_1654 are separated by 38 nucleotides EX28DRAFT_1650: EX28DRAFT_1650 - ribonuclease T, at 1,666,510 to 1,667,160 _1650 EX28DRAFT_1651: EX28DRAFT_1651 - monothiol glutaredoxin, Grx4 family, at 1,667,205 to 1,667,552 _1651 EX28DRAFT_1652: EX28DRAFT_1652 - Cell wall-associated hydrolases (invasion-associated proteins), at 1,667,891 to 1,668,664 _1652 EX28DRAFT_1653: EX28DRAFT_1653 - Superoxide dismutase, at 1,668,787 to 1,669,368 _1653 EX28DRAFT_1654: EX28DRAFT_1654 - Arabinose efflux permease, at 1,669,407 to 1,670,573 _1654 Position (kb) 1667 1668 1669Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 1667.004 kb on + strand, within EX28DRAFT_1650at 1667.191 kb on - strandat 1667.206 kb on + strandat 1667.282 kb on - strand, within EX28DRAFT_1651at 1667.360 kb on - strand, within EX28DRAFT_1651at 1667.360 kb on - strand, within EX28DRAFT_1651at 1667.400 kb on - strand, within EX28DRAFT_1651at 1667.492 kb on + strand, within EX28DRAFT_1651at 1667.493 kb on - strand, within EX28DRAFT_1651at 1667.494 kb on + strand, within EX28DRAFT_1651at 1667.494 kb on + strand, within EX28DRAFT_1651at 1667.495 kb on - strand, within EX28DRAFT_1651at 1667.495 kb on - strand, within EX28DRAFT_1651at 1667.567 kb on - strandat 1667.567 kb on - strandat 1667.567 kb on - strandat 1667.567 kb on - strandat 1667.641 kb on + strandat 1667.641 kb on + strandat 1667.643 kb on + strandat 1667.644 kb on - strandat 1667.650 kb on + strandat 1667.688 kb on + strandat 1667.780 kb on + strandat 1667.781 kb on - strandat 1667.781 kb on - strandat 1667.781 kb on - strandat 1667.781 kb on - strandat 1667.796 kb on - strandat 1667.798 kb on + strandat 1667.814 kb on + strandat 1667.821 kb on + strandat 1667.822 kb on - strandat 1667.822 kb on - strandat 1667.839 kb on + strandat 1667.839 kb on + strandat 1667.839 kb on + strandat 1667.931 kb on + strandat 1667.938 kb on + strandat 1668.247 kb on + strand, within EX28DRAFT_1652at 1668.314 kb on + strand, within EX28DRAFT_1652at 1668.371 kb on + strand, within EX28DRAFT_1652at 1668.371 kb on + strand, within EX28DRAFT_1652at 1668.378 kb on - strand, within EX28DRAFT_1652at 1668.379 kb on + strand, within EX28DRAFT_1652at 1668.425 kb on + strand, within EX28DRAFT_1652at 1668.425 kb on + strand, within EX28DRAFT_1652at 1668.530 kb on + strand, within EX28DRAFT_1652at 1668.531 kb on - strand, within EX28DRAFT_1652at 1668.606 kb on - strandat 1668.606 kb on - strandat 1668.606 kb on - strandat 1668.768 kb on + strandat 1668.769 kb on - strandat 1668.773 kb on + strandat 1668.774 kb on - strandat 1668.774 kb on - strandat 1668.815 kb on - strandat 1668.862 kb on + strand, within EX28DRAFT_1653at 1668.889 kb on + strand, within EX28DRAFT_1653at 1668.890 kb on - strand, within EX28DRAFT_1653at 1668.907 kb on - strand, within EX28DRAFT_1653at 1668.982 kb on - strand, within EX28DRAFT_1653at 1669.168 kb on - strand, within EX28DRAFT_1653at 1669.191 kb on + strand, within EX28DRAFT_1653at 1669.216 kb on - strand, within EX28DRAFT_1653at 1669.274 kb on - strand, within EX28DRAFT_1653at 1669.276 kb on + strand, within EX28DRAFT_1653at 1669.276 kb on + strand, within EX28DRAFT_1653at 1669.276 kb on + strand, within EX28DRAFT_1653at 1669.276 kb on + strand, within EX28DRAFT_1653at 1669.277 kb on - strand, within EX28DRAFT_1653at 1669.439 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
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1,667,004 + EX28DRAFT_1650 0.76 -5.2
1,667,191 - +0.1
1,667,206 + +0.7
1,667,282 - EX28DRAFT_1651 0.22 -2.3
1,667,360 - EX28DRAFT_1651 0.45 -4.3
1,667,360 - EX28DRAFT_1651 0.45 -0.3
1,667,400 - EX28DRAFT_1651 0.56 -0.6
1,667,492 + EX28DRAFT_1651 0.82 -5.9
1,667,493 - EX28DRAFT_1651 0.83 +0.4
1,667,494 + EX28DRAFT_1651 0.83 -0.2
1,667,494 + EX28DRAFT_1651 0.83 -1.8
1,667,495 - EX28DRAFT_1651 0.83 -2.6
1,667,495 - EX28DRAFT_1651 0.83 +0.4
1,667,567 - +1.2
1,667,567 - +0.1
1,667,567 - +0.3
1,667,567 - -0.3
1,667,641 + -1.1
1,667,641 + -2.6
1,667,643 + +0.7
1,667,644 - -0.3
1,667,650 + +0.1
1,667,688 + +1.4
1,667,780 + -1.0
1,667,781 - +1.2
1,667,781 - +0.6
1,667,781 - +0.3
1,667,781 - +0.6
1,667,796 - +0.6
1,667,798 + +0.5
1,667,814 + -0.5
1,667,821 + +1.0
1,667,822 - +0.4
1,667,822 - -0.0
1,667,839 + +0.5
1,667,839 + +0.1
1,667,839 + -0.5
1,667,931 + -0.9
1,667,938 + -3.4
1,668,247 + EX28DRAFT_1652 0.46 +0.1
1,668,314 + EX28DRAFT_1652 0.55 -5.9
1,668,371 + EX28DRAFT_1652 0.62 +0.7
1,668,371 + EX28DRAFT_1652 0.62 +1.2
1,668,378 - EX28DRAFT_1652 0.63 +0.6
1,668,379 + EX28DRAFT_1652 0.63 -1.0
1,668,425 + EX28DRAFT_1652 0.69 +0.7
1,668,425 + EX28DRAFT_1652 0.69 -0.6
1,668,530 + EX28DRAFT_1652 0.83 -0.5
1,668,531 - EX28DRAFT_1652 0.83 -2.0
1,668,606 - +0.4
1,668,606 - +0.1
1,668,606 - +0.1
1,668,768 + -2.3
1,668,769 - -0.3
1,668,773 + +2.3
1,668,774 - +0.1
1,668,774 - +0.1
1,668,815 - +0.4
1,668,862 + EX28DRAFT_1653 0.13 +0.3
1,668,889 + EX28DRAFT_1653 0.18 +0.0
1,668,890 - EX28DRAFT_1653 0.18 -0.6
1,668,907 - EX28DRAFT_1653 0.21 +0.3
1,668,982 - EX28DRAFT_1653 0.34 -0.7
1,669,168 - EX28DRAFT_1653 0.65 +0.2
1,669,191 + EX28DRAFT_1653 0.69 +0.3
1,669,216 - EX28DRAFT_1653 0.74 +0.2
1,669,274 - EX28DRAFT_1653 0.84 -0.4
1,669,276 + EX28DRAFT_1653 0.84 -0.7
1,669,276 + EX28DRAFT_1653 0.84 +0.0
1,669,276 + EX28DRAFT_1653 0.84 +0.1
1,669,276 + EX28DRAFT_1653 0.84 -0.8
1,669,277 - EX28DRAFT_1653 0.84 +1.1
1,669,439 + -1.8

Or see this region's nucleotide sequence