Experiment: M9 with sucrose and trichloroethylene 76.3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1465 and EX28DRAFT_1466 are separated by 169 nucleotides EX28DRAFT_1466 and EX28DRAFT_1467 are separated by 253 nucleotides EX28DRAFT_1467 and EX28DRAFT_1468 are separated by 123 nucleotides
EX28DRAFT_1465: EX28DRAFT_1465 - Sulfate permease and related transporters (MFS superfamily), at 1,478,276 to 1,479,991
_1465
EX28DRAFT_1466: EX28DRAFT_1466 - Lactoylglutathione lyase and related lyases, at 1,480,161 to 1,480,586
_1466
EX28DRAFT_1467: EX28DRAFT_1467 - hypothetical protein, at 1,480,840 to 1,481,388
_1467
EX28DRAFT_1468: EX28DRAFT_1468 - Outer membrane protein V, at 1,481,512 to 1,482,348
_1468
Position (kb)
1480
1481 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1479.267 kb on - strand, within EX28DRAFT_1465 at 1479.305 kb on - strand, within EX28DRAFT_1465 at 1479.309 kb on + strand, within EX28DRAFT_1465 at 1479.402 kb on - strand, within EX28DRAFT_1465 at 1479.402 kb on - strand, within EX28DRAFT_1465 at 1479.405 kb on - strand, within EX28DRAFT_1465 at 1479.444 kb on - strand, within EX28DRAFT_1465 at 1479.479 kb on + strand, within EX28DRAFT_1465 at 1479.480 kb on - strand, within EX28DRAFT_1465 at 1479.480 kb on - strand, within EX28DRAFT_1465 at 1479.480 kb on - strand, within EX28DRAFT_1465 at 1479.530 kb on + strand, within EX28DRAFT_1465 at 1479.531 kb on - strand, within EX28DRAFT_1465 at 1479.565 kb on + strand, within EX28DRAFT_1465 at 1479.566 kb on - strand, within EX28DRAFT_1465 at 1479.668 kb on - strand, within EX28DRAFT_1465 at 1479.668 kb on - strand, within EX28DRAFT_1465 at 1479.764 kb on - strand, within EX28DRAFT_1465 at 1479.792 kb on + strand, within EX28DRAFT_1465 at 1479.793 kb on - strand, within EX28DRAFT_1465 at 1479.793 kb on - strand, within EX28DRAFT_1465 at 1479.820 kb on - strand at 1479.831 kb on - strand at 1479.859 kb on - strand at 1479.908 kb on - strand at 1479.937 kb on - strand at 1479.954 kb on - strand at 1479.971 kb on + strand at 1479.975 kb on - strand at 1479.975 kb on - strand at 1480.095 kb on - strand at 1480.097 kb on + strand at 1480.131 kb on + strand at 1480.198 kb on + strand at 1480.199 kb on - strand at 1480.224 kb on - strand, within EX28DRAFT_1466 at 1480.256 kb on - strand, within EX28DRAFT_1466 at 1480.256 kb on - strand, within EX28DRAFT_1466 at 1480.256 kb on - strand, within EX28DRAFT_1466 at 1480.324 kb on - strand, within EX28DRAFT_1466 at 1480.566 kb on + strand at 1480.566 kb on + strand at 1480.576 kb on + strand at 1480.576 kb on + strand at 1480.576 kb on + strand at 1480.577 kb on - strand at 1480.624 kb on + strand at 1480.625 kb on - strand at 1480.625 kb on - strand at 1480.625 kb on - strand at 1480.639 kb on - strand at 1480.715 kb on - strand at 1480.766 kb on + strand at 1480.766 kb on + strand at 1480.766 kb on + strand at 1480.767 kb on - strand at 1480.767 kb on - strand at 1481.058 kb on + strand, within EX28DRAFT_1467 at 1481.068 kb on + strand, within EX28DRAFT_1467 at 1481.069 kb on - strand, within EX28DRAFT_1467 at 1481.189 kb on + strand, within EX28DRAFT_1467 at 1481.190 kb on - strand, within EX28DRAFT_1467 at 1481.190 kb on - strand, within EX28DRAFT_1467 at 1481.281 kb on + strand, within EX28DRAFT_1467 at 1481.283 kb on + strand, within EX28DRAFT_1467 at 1481.283 kb on + strand, within EX28DRAFT_1467 at 1481.285 kb on + strand, within EX28DRAFT_1467 at 1481.285 kb on + strand, within EX28DRAFT_1467 at 1481.286 kb on - strand, within EX28DRAFT_1467 at 1481.286 kb on - strand, within EX28DRAFT_1467 at 1481.287 kb on + strand, within EX28DRAFT_1467 at 1481.288 kb on - strand, within EX28DRAFT_1467 at 1481.387 kb on - strand at 1481.463 kb on + strand at 1481.464 kb on - strand at 1481.523 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM remove 1,479,267 - EX28DRAFT_1465 0.58 -0.6 1,479,305 - EX28DRAFT_1465 0.60 -0.4 1,479,309 + EX28DRAFT_1465 0.60 +0.2 1,479,402 - EX28DRAFT_1465 0.66 +0.6 1,479,402 - EX28DRAFT_1465 0.66 +0.0 1,479,405 - EX28DRAFT_1465 0.66 +1.3 1,479,444 - EX28DRAFT_1465 0.68 -3.4 1,479,479 + EX28DRAFT_1465 0.70 -0.4 1,479,480 - EX28DRAFT_1465 0.70 -0.3 1,479,480 - EX28DRAFT_1465 0.70 +1.4 1,479,480 - EX28DRAFT_1465 0.70 -1.2 1,479,530 + EX28DRAFT_1465 0.73 -0.2 1,479,531 - EX28DRAFT_1465 0.73 +0.1 1,479,565 + EX28DRAFT_1465 0.75 +0.7 1,479,566 - EX28DRAFT_1465 0.75 +0.4 1,479,668 - EX28DRAFT_1465 0.81 +1.3 1,479,668 - EX28DRAFT_1465 0.81 +0.2 1,479,764 - EX28DRAFT_1465 0.87 +0.1 1,479,792 + EX28DRAFT_1465 0.88 -0.6 1,479,793 - EX28DRAFT_1465 0.88 -2.8 1,479,793 - EX28DRAFT_1465 0.88 -2.4 1,479,820 - +0.6 1,479,831 - +0.3 1,479,859 - +1.8 1,479,908 - -0.4 1,479,937 - -0.4 1,479,954 - -0.0 1,479,971 + -1.0 1,479,975 - -0.9 1,479,975 - +0.5 1,480,095 - -0.4 1,480,097 + -0.8 1,480,131 + +0.6 1,480,198 + +0.9 1,480,199 - -0.4 1,480,224 - EX28DRAFT_1466 0.15 -0.9 1,480,256 - EX28DRAFT_1466 0.22 -0.6 1,480,256 - EX28DRAFT_1466 0.22 -0.1 1,480,256 - EX28DRAFT_1466 0.22 +1.1 1,480,324 - EX28DRAFT_1466 0.38 -2.4 1,480,566 + -0.4 1,480,566 + +1.6 1,480,576 + -0.2 1,480,576 + +0.4 1,480,576 + +0.7 1,480,577 - +0.1 1,480,624 + -0.0 1,480,625 - -1.2 1,480,625 - +1.3 1,480,625 - -0.5 1,480,639 - +0.7 1,480,715 - +0.3 1,480,766 + -3.6 1,480,766 + -1.1 1,480,766 + -0.2 1,480,767 - +0.4 1,480,767 - -0.1 1,481,058 + EX28DRAFT_1467 0.40 +0.7 1,481,068 + EX28DRAFT_1467 0.42 +0.3 1,481,069 - EX28DRAFT_1467 0.42 -0.6 1,481,189 + EX28DRAFT_1467 0.64 +1.3 1,481,190 - EX28DRAFT_1467 0.64 +0.1 1,481,190 - EX28DRAFT_1467 0.64 +0.2 1,481,281 + EX28DRAFT_1467 0.80 -2.8 1,481,283 + EX28DRAFT_1467 0.81 +0.3 1,481,283 + EX28DRAFT_1467 0.81 -2.0 1,481,285 + EX28DRAFT_1467 0.81 -1.0 1,481,285 + EX28DRAFT_1467 0.81 -0.1 1,481,286 - EX28DRAFT_1467 0.81 +0.9 1,481,286 - EX28DRAFT_1467 0.81 +0.6 1,481,287 + EX28DRAFT_1467 0.81 -0.4 1,481,288 - EX28DRAFT_1467 0.82 -0.5 1,481,387 - +0.5 1,481,463 + +0.2 1,481,464 - -0.5 1,481,523 - +0.5
Or see this region's nucleotide sequence