Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1466

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1465 and EX28DRAFT_1466 are separated by 169 nucleotidesEX28DRAFT_1466 and EX28DRAFT_1467 are separated by 253 nucleotidesEX28DRAFT_1467 and EX28DRAFT_1468 are separated by 123 nucleotides EX28DRAFT_1465: EX28DRAFT_1465 - Sulfate permease and related transporters (MFS superfamily), at 1,478,276 to 1,479,991 _1465 EX28DRAFT_1466: EX28DRAFT_1466 - Lactoylglutathione lyase and related lyases, at 1,480,161 to 1,480,586 _1466 EX28DRAFT_1467: EX28DRAFT_1467 - hypothetical protein, at 1,480,840 to 1,481,388 _1467 EX28DRAFT_1468: EX28DRAFT_1468 - Outer membrane protein V, at 1,481,512 to 1,482,348 _1468 Position (kb) 1480 1481Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1479.267 kb on - strand, within EX28DRAFT_1465at 1479.305 kb on - strand, within EX28DRAFT_1465at 1479.309 kb on + strand, within EX28DRAFT_1465at 1479.402 kb on - strand, within EX28DRAFT_1465at 1479.402 kb on - strand, within EX28DRAFT_1465at 1479.405 kb on - strand, within EX28DRAFT_1465at 1479.444 kb on - strand, within EX28DRAFT_1465at 1479.479 kb on + strand, within EX28DRAFT_1465at 1479.480 kb on - strand, within EX28DRAFT_1465at 1479.480 kb on - strand, within EX28DRAFT_1465at 1479.480 kb on - strand, within EX28DRAFT_1465at 1479.530 kb on + strand, within EX28DRAFT_1465at 1479.531 kb on - strand, within EX28DRAFT_1465at 1479.565 kb on + strand, within EX28DRAFT_1465at 1479.566 kb on - strand, within EX28DRAFT_1465at 1479.668 kb on - strand, within EX28DRAFT_1465at 1479.668 kb on - strand, within EX28DRAFT_1465at 1479.764 kb on - strand, within EX28DRAFT_1465at 1479.792 kb on + strand, within EX28DRAFT_1465at 1479.793 kb on - strand, within EX28DRAFT_1465at 1479.793 kb on - strand, within EX28DRAFT_1465at 1479.820 kb on - strandat 1479.831 kb on - strandat 1479.859 kb on - strandat 1479.908 kb on - strandat 1479.937 kb on - strandat 1479.954 kb on - strandat 1479.971 kb on + strandat 1479.975 kb on - strandat 1479.975 kb on - strandat 1480.095 kb on - strandat 1480.097 kb on + strandat 1480.131 kb on + strandat 1480.198 kb on + strandat 1480.199 kb on - strandat 1480.224 kb on - strand, within EX28DRAFT_1466at 1480.256 kb on - strand, within EX28DRAFT_1466at 1480.256 kb on - strand, within EX28DRAFT_1466at 1480.256 kb on - strand, within EX28DRAFT_1466at 1480.324 kb on - strand, within EX28DRAFT_1466at 1480.566 kb on + strandat 1480.566 kb on + strandat 1480.576 kb on + strandat 1480.576 kb on + strandat 1480.576 kb on + strandat 1480.577 kb on - strandat 1480.624 kb on + strandat 1480.625 kb on - strandat 1480.625 kb on - strandat 1480.625 kb on - strandat 1480.639 kb on - strandat 1480.715 kb on - strandat 1480.766 kb on + strandat 1480.766 kb on + strandat 1480.766 kb on + strandat 1480.767 kb on - strandat 1480.767 kb on - strandat 1481.058 kb on + strand, within EX28DRAFT_1467at 1481.068 kb on + strand, within EX28DRAFT_1467at 1481.069 kb on - strand, within EX28DRAFT_1467at 1481.189 kb on + strand, within EX28DRAFT_1467at 1481.190 kb on - strand, within EX28DRAFT_1467at 1481.190 kb on - strand, within EX28DRAFT_1467at 1481.281 kb on + strand, within EX28DRAFT_1467at 1481.283 kb on + strand, within EX28DRAFT_1467at 1481.283 kb on + strand, within EX28DRAFT_1467at 1481.285 kb on + strand, within EX28DRAFT_1467at 1481.285 kb on + strand, within EX28DRAFT_1467at 1481.286 kb on - strand, within EX28DRAFT_1467at 1481.286 kb on - strand, within EX28DRAFT_1467at 1481.287 kb on + strand, within EX28DRAFT_1467at 1481.288 kb on - strand, within EX28DRAFT_1467at 1481.387 kb on - strandat 1481.463 kb on + strandat 1481.464 kb on - strandat 1481.523 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
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1,479,267 - EX28DRAFT_1465 0.58 -0.6
1,479,305 - EX28DRAFT_1465 0.60 -0.4
1,479,309 + EX28DRAFT_1465 0.60 +0.2
1,479,402 - EX28DRAFT_1465 0.66 +0.6
1,479,402 - EX28DRAFT_1465 0.66 +0.0
1,479,405 - EX28DRAFT_1465 0.66 +1.3
1,479,444 - EX28DRAFT_1465 0.68 -3.4
1,479,479 + EX28DRAFT_1465 0.70 -0.4
1,479,480 - EX28DRAFT_1465 0.70 -0.3
1,479,480 - EX28DRAFT_1465 0.70 +1.4
1,479,480 - EX28DRAFT_1465 0.70 -1.2
1,479,530 + EX28DRAFT_1465 0.73 -0.2
1,479,531 - EX28DRAFT_1465 0.73 +0.1
1,479,565 + EX28DRAFT_1465 0.75 +0.7
1,479,566 - EX28DRAFT_1465 0.75 +0.4
1,479,668 - EX28DRAFT_1465 0.81 +1.3
1,479,668 - EX28DRAFT_1465 0.81 +0.2
1,479,764 - EX28DRAFT_1465 0.87 +0.1
1,479,792 + EX28DRAFT_1465 0.88 -0.6
1,479,793 - EX28DRAFT_1465 0.88 -2.8
1,479,793 - EX28DRAFT_1465 0.88 -2.4
1,479,820 - +0.6
1,479,831 - +0.3
1,479,859 - +1.8
1,479,908 - -0.4
1,479,937 - -0.4
1,479,954 - -0.0
1,479,971 + -1.0
1,479,975 - -0.9
1,479,975 - +0.5
1,480,095 - -0.4
1,480,097 + -0.8
1,480,131 + +0.6
1,480,198 + +0.9
1,480,199 - -0.4
1,480,224 - EX28DRAFT_1466 0.15 -0.9
1,480,256 - EX28DRAFT_1466 0.22 -0.6
1,480,256 - EX28DRAFT_1466 0.22 -0.1
1,480,256 - EX28DRAFT_1466 0.22 +1.1
1,480,324 - EX28DRAFT_1466 0.38 -2.4
1,480,566 + -0.4
1,480,566 + +1.6
1,480,576 + -0.2
1,480,576 + +0.4
1,480,576 + +0.7
1,480,577 - +0.1
1,480,624 + -0.0
1,480,625 - -1.2
1,480,625 - +1.3
1,480,625 - -0.5
1,480,639 - +0.7
1,480,715 - +0.3
1,480,766 + -3.6
1,480,766 + -1.1
1,480,766 + -0.2
1,480,767 - +0.4
1,480,767 - -0.1
1,481,058 + EX28DRAFT_1467 0.40 +0.7
1,481,068 + EX28DRAFT_1467 0.42 +0.3
1,481,069 - EX28DRAFT_1467 0.42 -0.6
1,481,189 + EX28DRAFT_1467 0.64 +1.3
1,481,190 - EX28DRAFT_1467 0.64 +0.1
1,481,190 - EX28DRAFT_1467 0.64 +0.2
1,481,281 + EX28DRAFT_1467 0.80 -2.8
1,481,283 + EX28DRAFT_1467 0.81 +0.3
1,481,283 + EX28DRAFT_1467 0.81 -2.0
1,481,285 + EX28DRAFT_1467 0.81 -1.0
1,481,285 + EX28DRAFT_1467 0.81 -0.1
1,481,286 - EX28DRAFT_1467 0.81 +0.9
1,481,286 - EX28DRAFT_1467 0.81 +0.6
1,481,287 + EX28DRAFT_1467 0.81 -0.4
1,481,288 - EX28DRAFT_1467 0.82 -0.5
1,481,387 - +0.5
1,481,463 + +0.2
1,481,464 - -0.5
1,481,523 - +0.5

Or see this region's nucleotide sequence