Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1412

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1411 and EX28DRAFT_1412 overlap by 8 nucleotidesEX28DRAFT_1412 and EX28DRAFT_1413 overlap by 11 nucleotides EX28DRAFT_1411: EX28DRAFT_1411 - 3-oxoadipyl-CoA thiolase, at 1,419,701 to 1,420,906 _1411 EX28DRAFT_1412: EX28DRAFT_1412 - phenylacetic acid degradation protein PaaD, at 1,420,899 to 1,421,327 _1412 EX28DRAFT_1413: EX28DRAFT_1413 - 3-hydroxyacyl-CoA dehydrogenase PaaC, at 1,421,317 to 1,422,741 _1413 Position (kb) 1420 1421 1422Strain fitness (log2 ratio) -2 -1 0 1at 1419.968 kb on - strand, within EX28DRAFT_1411at 1419.968 kb on - strand, within EX28DRAFT_1411at 1420.079 kb on + strand, within EX28DRAFT_1411at 1420.420 kb on + strand, within EX28DRAFT_1411at 1420.420 kb on + strand, within EX28DRAFT_1411at 1420.420 kb on + strand, within EX28DRAFT_1411at 1420.421 kb on - strand, within EX28DRAFT_1411at 1420.999 kb on + strand, within EX28DRAFT_1412at 1420.999 kb on + strand, within EX28DRAFT_1412at 1421.016 kb on - strand, within EX28DRAFT_1412at 1421.327 kb on + strandat 1421.328 kb on - strandat 1421.328 kb on - strandat 1421.328 kb on - strandat 1421.328 kb on - strandat 1421.328 kb on - strandat 1421.331 kb on + strandat 1421.332 kb on - strandat 1421.332 kb on - strandat 1421.332 kb on - strandat 1421.783 kb on + strand, within EX28DRAFT_1413at 1421.785 kb on + strand, within EX28DRAFT_1413at 1421.840 kb on + strand, within EX28DRAFT_1413at 1421.841 kb on - strand, within EX28DRAFT_1413at 1421.898 kb on - strand, within EX28DRAFT_1413

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
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1,419,968 - EX28DRAFT_1411 0.22 +0.1
1,419,968 - EX28DRAFT_1411 0.22 +1.0
1,420,079 + EX28DRAFT_1411 0.31 -0.3
1,420,420 + EX28DRAFT_1411 0.60 -1.6
1,420,420 + EX28DRAFT_1411 0.60 -0.0
1,420,420 + EX28DRAFT_1411 0.60 -0.4
1,420,421 - EX28DRAFT_1411 0.60 +0.4
1,420,999 + EX28DRAFT_1412 0.23 +0.0
1,420,999 + EX28DRAFT_1412 0.23 -1.5
1,421,016 - EX28DRAFT_1412 0.27 +0.2
1,421,327 + +0.1
1,421,328 - +0.2
1,421,328 - +0.6
1,421,328 - +1.5
1,421,328 - -0.2
1,421,328 - -0.4
1,421,331 + -1.2
1,421,332 - +0.1
1,421,332 - -0.2
1,421,332 - +0.8
1,421,783 + EX28DRAFT_1413 0.33 +1.3
1,421,785 + EX28DRAFT_1413 0.33 +0.4
1,421,840 + EX28DRAFT_1413 0.37 -1.7
1,421,841 - EX28DRAFT_1413 0.37 -2.5
1,421,898 - EX28DRAFT_1413 0.41 +0.4

Or see this region's nucleotide sequence