Experiment: M9 with sucrose and trichloroethylene 76.3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0993 and EX28DRAFT_0994 are separated by 112 nucleotides EX28DRAFT_0994 and EX28DRAFT_0995 are separated by 37 nucleotides
EX28DRAFT_0993: EX28DRAFT_0993 - TIGR01620 family protein, at 995,639 to 996,691
_0993
EX28DRAFT_0994: EX28DRAFT_0994 - Transcriptional regulator of aromatic amino acids metabolism, at 996,804 to 998,345
_0994
EX28DRAFT_0995: EX28DRAFT_0995 - Domain of unknown function (DUF4432), at 998,383 to 999,591
_0995
Position (kb) 996
997
998
999 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 996.381 kb on + strand, within EX28DRAFT_0993 at 996.381 kb on + strand, within EX28DRAFT_0993 at 996.395 kb on + strand, within EX28DRAFT_0993 at 996.396 kb on - strand, within EX28DRAFT_0993 at 996.434 kb on - strand, within EX28DRAFT_0993 at 996.546 kb on + strand, within EX28DRAFT_0993 at 996.705 kb on + strand at 996.706 kb on - strand at 996.764 kb on + strand at 996.764 kb on + strand at 996.765 kb on - strand at 996.765 kb on - strand at 996.871 kb on + strand at 996.875 kb on + strand at 996.876 kb on - strand at 996.886 kb on + strand at 997.004 kb on - strand, within EX28DRAFT_0994 at 997.004 kb on - strand, within EX28DRAFT_0994 at 997.004 kb on - strand, within EX28DRAFT_0994 at 997.251 kb on - strand, within EX28DRAFT_0994 at 997.251 kb on - strand, within EX28DRAFT_0994 at 997.251 kb on - strand, within EX28DRAFT_0994 at 997.297 kb on - strand, within EX28DRAFT_0994 at 997.575 kb on + strand, within EX28DRAFT_0994 at 997.598 kb on + strand, within EX28DRAFT_0994 at 997.599 kb on - strand, within EX28DRAFT_0994 at 997.722 kb on - strand, within EX28DRAFT_0994 at 997.730 kb on + strand, within EX28DRAFT_0994 at 997.872 kb on + strand, within EX28DRAFT_0994 at 997.873 kb on - strand, within EX28DRAFT_0994 at 997.902 kb on - strand, within EX28DRAFT_0994 at 998.100 kb on + strand, within EX28DRAFT_0994 at 998.192 kb on + strand at 998.193 kb on - strand at 998.385 kb on - strand at 998.492 kb on + strand at 998.492 kb on + strand at 998.493 kb on - strand at 998.493 kb on - strand at 998.536 kb on - strand, within EX28DRAFT_0995 at 998.536 kb on - strand, within EX28DRAFT_0995 at 998.576 kb on + strand, within EX28DRAFT_0995 at 998.606 kb on + strand, within EX28DRAFT_0995 at 998.638 kb on + strand, within EX28DRAFT_0995 at 998.689 kb on - strand, within EX28DRAFT_0995 at 998.792 kb on + strand, within EX28DRAFT_0995 at 998.793 kb on - strand, within EX28DRAFT_0995 at 998.909 kb on + strand, within EX28DRAFT_0995 at 998.910 kb on - strand, within EX28DRAFT_0995 at 998.910 kb on - strand, within EX28DRAFT_0995 at 998.910 kb on - strand, within EX28DRAFT_0995 at 998.990 kb on + strand, within EX28DRAFT_0995 at 998.990 kb on + strand, within EX28DRAFT_0995 at 998.991 kb on - strand, within EX28DRAFT_0995 at 999.028 kb on - strand, within EX28DRAFT_0995 at 999.114 kb on + strand, within EX28DRAFT_0995 at 999.114 kb on + strand, within EX28DRAFT_0995 at 999.141 kb on - strand, within EX28DRAFT_0995 at 999.182 kb on + strand, within EX28DRAFT_0995 at 999.252 kb on + strand, within EX28DRAFT_0995 at 999.252 kb on + strand, within EX28DRAFT_0995 at 999.253 kb on - strand, within EX28DRAFT_0995 at 999.253 kb on - strand, within EX28DRAFT_0995 at 999.254 kb on + strand, within EX28DRAFT_0995 at 999.254 kb on + strand, within EX28DRAFT_0995 at 999.255 kb on - strand, within EX28DRAFT_0995 at 999.317 kb on - strand, within EX28DRAFT_0995 at 999.317 kb on - strand, within EX28DRAFT_0995
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM remove 996,381 + EX28DRAFT_0993 0.70 -0.2 996,381 + EX28DRAFT_0993 0.70 +0.4 996,395 + EX28DRAFT_0993 0.72 +0.9 996,396 - EX28DRAFT_0993 0.72 -0.3 996,434 - EX28DRAFT_0993 0.75 -0.4 996,546 + EX28DRAFT_0993 0.86 +0.1 996,705 + -1.6 996,706 - +0.1 996,764 + -0.3 996,764 + +0.0 996,765 - +0.6 996,765 - +0.2 996,871 + +0.4 996,875 + +2.4 996,876 - -0.1 996,886 + +0.1 997,004 - EX28DRAFT_0994 0.13 -2.1 997,004 - EX28DRAFT_0994 0.13 -0.3 997,004 - EX28DRAFT_0994 0.13 -0.5 997,251 - EX28DRAFT_0994 0.29 -0.4 997,251 - EX28DRAFT_0994 0.29 -1.3 997,251 - EX28DRAFT_0994 0.29 -0.5 997,297 - EX28DRAFT_0994 0.32 -0.1 997,575 + EX28DRAFT_0994 0.50 -1.3 997,598 + EX28DRAFT_0994 0.51 +0.5 997,599 - EX28DRAFT_0994 0.52 +0.3 997,722 - EX28DRAFT_0994 0.60 -0.3 997,730 + EX28DRAFT_0994 0.60 -1.1 997,872 + EX28DRAFT_0994 0.69 +0.2 997,873 - EX28DRAFT_0994 0.69 +0.6 997,902 - EX28DRAFT_0994 0.71 -0.7 998,100 + EX28DRAFT_0994 0.84 +0.2 998,192 + -0.3 998,193 - -0.7 998,385 - -1.4 998,492 + -1.9 998,492 + +0.8 998,493 - -0.6 998,493 - +0.1 998,536 - EX28DRAFT_0995 0.13 +0.3 998,536 - EX28DRAFT_0995 0.13 -4.0 998,576 + EX28DRAFT_0995 0.16 -0.5 998,606 + EX28DRAFT_0995 0.18 -1.1 998,638 + EX28DRAFT_0995 0.21 +0.2 998,689 - EX28DRAFT_0995 0.25 -0.9 998,792 + EX28DRAFT_0995 0.34 -0.5 998,793 - EX28DRAFT_0995 0.34 +0.9 998,909 + EX28DRAFT_0995 0.44 +0.6 998,910 - EX28DRAFT_0995 0.44 +1.0 998,910 - EX28DRAFT_0995 0.44 +0.1 998,910 - EX28DRAFT_0995 0.44 -3.1 998,990 + EX28DRAFT_0995 0.50 +0.2 998,990 + EX28DRAFT_0995 0.50 -0.3 998,991 - EX28DRAFT_0995 0.50 +0.5 999,028 - EX28DRAFT_0995 0.53 +1.1 999,114 + EX28DRAFT_0995 0.60 -0.5 999,114 + EX28DRAFT_0995 0.60 +1.7 999,141 - EX28DRAFT_0995 0.63 -1.9 999,182 + EX28DRAFT_0995 0.66 +0.1 999,252 + EX28DRAFT_0995 0.72 -0.1 999,252 + EX28DRAFT_0995 0.72 +0.3 999,253 - EX28DRAFT_0995 0.72 -0.8 999,253 - EX28DRAFT_0995 0.72 -2.2 999,254 + EX28DRAFT_0995 0.72 +0.6 999,254 + EX28DRAFT_0995 0.72 +0.8 999,255 - EX28DRAFT_0995 0.72 +0.6 999,317 - EX28DRAFT_0995 0.77 +1.5 999,317 - EX28DRAFT_0995 0.77 -1.0
Or see this region's nucleotide sequence